Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0650 ATGGCTACAATCTCCCGAGTCACTTCCACCTCTCCATCTCTGCGTCACGACGCAATTCCACCGCATAACTTCCATATTCGGAATACCTTATCTTTCTCTTCAAATTATTCGTTGAAGAGAATTATTACTTCCGGTGGCCGTAGTGGTCGGAGATTGATTGTTGCTGCTAGTCCTCCAACTGAAGATGCTGTTGTTGCTACTCATCCTCTTACTAAACAGGATCTCATCGATTATCTTGCTTCTGGTTGTAAAACCAAAGATAAATGGAGAATAGGTACTGAACATGAAAAGTTCGGTTTTGAGCTTGGAAGCTTGCGTCCTATGAAGTATGAGCAAATATCAGAATTGCTAAATGGCATTGCTGAGAGATTTGACTGGGAAAAAGTAATGGAAGGTGATAACATCATTGGACTCAAACAAGGGAAGCAGAGCATATCATTAGAGCCAGGAGGTCAGTTTGAACTTAGTGGAGCCCCTCTTGAAACTCTGCATCAAACTTGTGCTGAAGTTAATTCGCACCTCTATCAAGTTAAAGCTGTTGCCGAGGAAATGGGAATTGGATTTTTGGGTATTGGTTTCCAGCCAAAGTGGGAACGCAAAGACATACCTATGATGCCAAAGGGAAGATATGAGATTATGAAAAAGTACATGCCTAAAGTTGGTTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTACAGGTCAATCTGGACTTCAGTTCTGAAGCCGACATGATCAGGAAATTTCGTGCTGGCCTAGCTTTGCAGCCTATAGCAACAGCTCTTTTTGCAAATTCACCCTTCACAGATGGAAAGCCCAATGGGTTTGTCAGTATGAGAAGCCATATTTGGACCGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTGTTTGATGACTCCTTTGGGTTTGAGCAGTACGTTGACTATGCTCTTGATGTTCCAATGTATTTCGTCTATCGGAAAAAGAAATATATCGACTGTACTGGAATGACCTTCAGGGACTTCTTGGCAGGAAAGCTTCCTTGTATTCCTGGTGAATTACCGACTCTTAATGATTGGGAGAATCATTTGACCACTATATTTCCCGAGGTTAGGCTAAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGAGAAGGTTATGTGCTTTACCAGCATTTTGGGTAGGGATATTGTATGATGAGGTTTCTTTGCAACGTGTTTTGGATTTGACAGCGGATTGGACTCTAGAAGAAAGACAAATGCTAAGGAATAAGGTCACTGTAACCGGTCTAAAGACACCATTTCGAGATGGTTTGCTGAAGCATGTTGCTGAAGAGGTTCTAGAGTTGGCAAAGGATGGTTTGGAAAGACGAGGCTATAAAGAATCAGGATTTTTAAATGCGGTAGCTGAGGTGGTTAGAACAGGTGTTACTCCAGCTGAGAGGCTTTTGGAATTGTATCATGGAAAGTGGGAGCAGTCTGTAGATCATGTATTTGAGGAATTGCTTTACTAA 1512 0.4266 MATISRVTSTSPSLRHDAIPPHNFHIRNTLSFSSNYSLKRIITSGGRSGRRLIVAASPPTEDAVVATHPLTKQDLIDYLASGCKTKDKWRIGTEHEKFGFELGSLRPMKYEQISELLNGIAERFDWEKVMEGDNIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWERKDIPMMPKGRYEIMKKYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTDGKPNGFVSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCTGMTFRDFLAGKLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGILYDEVSLQRVLDLTADWTLEERQMLRNKVTVTGLKTPFRDGLLKHVAEEVLELAKDGLERRGYKESGFLNAVAEVVRTGVTPAERLLELYHGKWEQSVDHVFEELLY* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0650 503 Gene3D - 55 503 - -
Tpr3g0650 503 TIGRFAM glu_cys_lig_pln: glutamate--cysteine ligase 69 503 IPR011556 GO:0004357|GO:0006750
Tpr3g0650 503 Pfam Glutamate-cysteine ligase family 2(GCS2) 122 411 IPR006336 GO:0004357|GO:0042398
Tpr3g0650 503 PANTHER GLUTAMATE--CYSTEINE LIGASE 13 503 - -
Tpr3g0650 503 PIRSF GCL 57 503 IPR035434 GO:0004357|GO:0006750
Tpr3g0650 503 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 13 503 IPR035434 GO:0004357|GO:0006750
Tpr3g0650 503 SUPERFAMILY Glutamine synthetase/guanido kinase 81 501 IPR014746 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0650 Tpr-Chr3 6342395 6349570 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0650 K01919 - gmx:547545 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0650 3 6342395 6349570 Tpr3g0650 3 6342395 6349570 ECH
Tpr2g3877 2 41530701 41535165 Tpr3g0650 3 6342395 6349570 PCT