Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0609 ATGGGAGTGATGAGCATGGAACAACCTCAATTGTTGTCTAAGATAGCCACTGGTGATGGACATGGTGAAACATCATCTTACTTTGATGGATGGAAAGCTTATGATAAAGACCCTTTTCATATTACTAAAAATCCTCAAGGAGTTATCCAAATGGGTCTCGCAGAGAATCAGCTTACCGCTGACTTGGTTCAAAATTGGATAATGAGCAACCCAGAAGCCTCAATTTGTACTCTAGAAGGAGTACATAATTTCAAAGAAATGGCTAATTTTCAGGATTATCATGGTCTACCAGAGTTCAGAAATGCTGTGGCTAAATTCATGTCTAGAACAAGAGGAAACAGAGTAACATTTGATCCTGATCGTATTGTGATGAGTGGTGGAGCAACTGGAGCACATGAGGTTACTGCCTTTTGTTTGGCAGATCCTGGTGATGCTTTTTTGGTACCTACACCTTACTATCCAGGTTTTGATCGCGATTTGAGGTGGCGAACTGGAGTTAAACTTGTTCCGGTTATCTGTGAAAGCTCAAACAATTTCAAATTAACAAAACAAGCTTTGGAAGAAGCATATGAAAAAGCCAAAATTGATAACATCAGAATAAAAGGTTTACTCATAACAAATCCTTCAAATCCATTAGGCACAGTTATGGACAGAACCACATTAAAAACCGTTGTAAATTTCATCAACGAAAAGCGTATTCATCTTATAAGCGATGAAATTTACGCTGCAACGGTTTTTAGCCACCCAAGTTTCATAAGCATTGCTGAGATCATAGAACAAGAAACAGACATCGAATGTGACCGTAACCTCATTCACATAGTTTACAGTCTTTCAAAAGATATGGGATTCCCCGGTTTTAGAGTTGGTATAATTTACTCTTACAATGATACCGTTGTTAATTGTGCGCGCAAAATGTCAAGTTTCGGATTAGTTTCAACTCAGACTCAATATTTGATGGCGAAAATGTTATCTGATGATGAATTTGTTGAAAGGTTTCTTGCTGAGAGTGCAAAGAGGTTAGCACTAAGGTACAAAGTTTTCACCGGCGGATTAATCAAAGTTGGAATTAAGTGTTTACAAAGTAATGGTGGACTTTTTGTATGGATGGATTTAAGAGGACTTTTGAAGGAAGCTACATTTGAATCAGAATTGGAATTATGGAGAGTGATTATTCATGAAGTTAAGATTAATGTTTCACCTGGTGTTTCTTTTCATTGTTCCGAGCCAGGTTGGTTTCGAGTTTGTTATGCTAATATGGATGATAGGGATGTGCAAATTGCATTAAACAGGATTAGATCATTTGTTATGAAGAATAATAAGGAGGTTATGGTTTCTGATAAGAACACTAAACATTGCTGGCAGAGTAATTTGAGGTTAAGCCTTAAAACAAAAAGGTTTGATGATATTATGATGTCATCACCTCATTCTCCAATGGCTCACTCACCTCTTGTTAAAGCCAGCACTTGA 1467 0.3722 MGVMSMEQPQLLSKIATGDGHGETSSYFDGWKAYDKDPFHITKNPQGVIQMGLAENQLTADLVQNWIMSNPEASICTLEGVHNFKEMANFQDYHGLPEFRNAVAKFMSRTRGNRVTFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVKLVPVICESSNNFKLTKQALEEAYEKAKIDNIRIKGLLITNPSNPLGTVMDRTTLKTVVNFINEKRIHLISDEIYAATVFSHPSFISIAEIIEQETDIECDRNLIHIVYSLSKDMGFPGFRVGIIYSYNDTVVNCARKMSSFGLVSTQTQYLMAKMLSDDEFVERFLAESAKRLALRYKVFTGGLIKVGIKCLQSNGGLFVWMDLRGLLKEATFESELELWRVIIHEVKINVSPGVSFHCSEPGWFRVCYANMDDRDVQIALNRIRSFVMKNNKEVMVSDKNTKHCWQSNLRLSLKTKRFDDIMMSSPHSPMAHSPLVKAST* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0609 488 CDD AAT_like 89 432 - -
Tpr3g0609 488 SUPERFAMILY PLP-dependent transferases 22 435 IPR015424 -
Tpr3g0609 488 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Tpr3g0609 488 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 447 - -
Tpr3g0609 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Tpr3g0609 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Tpr3g0609 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Tpr3g0609 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Tpr3g0609 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Tpr3g0609 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Tpr3g0609 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Tpr3g0609 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Tpr3g0609 488 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 1 447 - -
Tpr3g0609 488 Gene3D - 71 325 IPR015421 GO:0003824
Tpr3g0609 488 Pfam Aminotransferase class I and II 49 431 IPR004839 GO:0009058|GO:0030170
Tpr3g0609 488 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0609 Tpr-Chr3 5976630 5979289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0609 K20772 - gmx:100037458 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0609 3 5976630 5979289 Tpr3g0609 3 5976630 5979289 ECH
Tpr2g3888 2 41631243 41634385 Tpr3g0609 3 5976630 5979289 PCT