Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3888 ATGGCTAATTTTCAAGATTATCATGGTTTGCCACAATTTCGACAAGCTGTGGCTAAATTCATGGGAAGAACAAGAGGGAATAGAGTTTGTTTTGATCCTGCCAGAATTGTTATGAGTGGTGGAGCAACTGGAGCACATGAGGTTACAGCCTTTTGTTTGGCAGATCCTGGTGATGCATTTTTGGTGCCTACCCCTTATTATGCAGGTTTTGACAGAGATTTGAAATGGAGAACAGGAGTTGAACTTGTTCCAGTCATTTGTAAAAGCTCCAACAATTTCAAGCTAACAAGAAAAGCCTTAGAAGCAGCATTTGAAAAAGGCAAAGAACAAAACATCAAAATAAAAGGTTTACTTGTTACAAATCCATCAAATCCTTTAGGAACAATCATGGACAAAGAAACACTAACAACATTAGTAAGTTTCATCAATGAAAAACATATCCACCTAATAAGTGATGAAATATATGCTTCAACAGTTTTTTGCCACCCAAGTTTCATAAGCATAGCTGAGATAATAGAAGACGCAAACATCGAATGTAACCGTAACCTTATTCACATTGTTTATAGTCTTTCAAAAGATATGGGATTTCCTGGCTTTAGAGTTGGTATAATATATTCATACAATGATGAAGTTGTTAATTGCGCTCGCAAAATGTCGAGTTTTGGATTAGTCTCTTCGCAGACGCAATATCTTATTGCGTCGATGCTTTCTGACGATGAATTTGTGGATAAGTTTGTTGTAGAAAGTGCAAAGAGACTTGCTAAAAGATATGGAATTTTTTGTAGAGGTTTAGCACAAGTTGGTATAAAGTGTTTGCAAAGTAATGCTGGTCTTTTTCTATGGATGGATTTGAGGTGTCTTTTGAGGAAACAAACATTTGATGAAGAAATGAAACTATGGAAAGTGATTATTCATCAAGTTAAGATTAATATATCACCTGGTGTTTCTTTTCATTGTAGTGAACCAGGGTGGTTTAGGGTGTGTTATGCAAATATGGATGATAGAGATGTTGAAGTTTCTTTGACAAGAATTCGCGCTTTTGTGAGGCGAAATAAGGCTGAAATGGTGGCTGCGAAGAATCGTTGTAGTCGGAGAAACTTGAGGCTAAGTTTCTCATTTAGAAGTTTGGATGATTTTTTGATATCACCTCATTCTTCTATTACTCATTCTCCTATTGTGAAAGCCACCACTTGCTGA 1197 0.3626 MANFQDYHGLPQFRQAVAKFMGRTRGNRVCFDPARIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYAGFDRDLKWRTGVELVPVICKSSNNFKLTRKALEAAFEKGKEQNIKIKGLLVTNPSNPLGTIMDKETLTTLVSFINEKHIHLISDEIYASTVFCHPSFISIAEIIEDANIECNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDEVVNCARKMSSFGLVSSQTQYLIASMLSDDEFVDKFVVESAKRLAKRYGIFCRGLAQVGIKCLQSNAGLFLWMDLRCLLRKQTFDEEMKLWKVIIHQVKINISPGVSFHCSEPGWFRVCYANMDDRDVEVSLTRIRAFVRRNKAEMVAAKNRCSRRNLRLSFSFRSLDDFLISPHSSITHSPIVKATTC* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3888 398 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 360 - -
Tpr2g3888 398 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 35 55 - -
Tpr2g3888 398 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 57 78 - -
Tpr2g3888 398 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 111 135 - -
Tpr2g3888 398 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 147 170 - -
Tpr2g3888 398 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 183 207 - -
Tpr2g3888 398 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 215 238 - -
Tpr2g3888 398 Pfam Aminotransferase class I and II 2 344 IPR004839 GO:0009058|GO:0030170
Tpr2g3888 398 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 1 360 - -
Tpr2g3888 398 Gene3D Aspartate Aminotransferase, domain 1 239 343 IPR015422 GO:0003824
Tpr2g3888 398 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 189 202 IPR004838 GO:0003824|GO:0009058|GO:0030170
Tpr2g3888 398 Gene3D - 2 238 IPR015421 GO:0003824
Tpr2g3888 398 CDD AAT_like 3 346 - -
Tpr2g3888 398 SUPERFAMILY PLP-dependent transferases 3 350 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3888 Tpr-Chr2 41631243 41634385 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3888 K20772 - gmx:100793020 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3888 2 41631243 41634385 Tpr3g0609 3 5976630 5979289 PCT