Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0566 ATGGCTGAAGAGAACAAATCATTCATCGTCGAGGTTGAAAAAGCTAGGGAAGCCAAAGATGACAGACCATCCATGGGACCTGTCTATCGTACCACTTTCTCTAATGATTCCTCTCCTCCTCCCATTCAAGGTCTTGATTCATGTTGGGATGTTTTCAGGATGTCTGTTGAGAAGAATCCAACAAATCCAATGCTTGGCGTCCGTGAAATAGTGGATGGGAAGCCTGGCAAATTCAAGTGGCAAACTTACAAAGAAATTTATGACAAGGTGATCAAAGTTGGAAATTCCATCCGTGCTTGTGGTTATGGGGAAGGAGTAAAATGTGGCATTTATGGTGTCAATAGCCCGGAATGGATTATGAGCATGGAGGCCTGCAATGCTCATGGACTTTATTGTGTTCCTTTATATGATACCTTAGGTGCCGGTGCTGTGGAATTCATTATATCCCATGCAGAAGTCTCGCTTGCATTTGTTGAAGAAAAGAAGATACCTGAGCTATTGAAGACATTTCCAAATGCAGCAAAGCATCTCAAGACCATTGTGAGCTTTGGAAAGGTTACTCCAGAACAAAAGCAAGAATTTGAGAAGTTTGAGTTGATAATATATTCATGGGATGAATTTTTAGAAGTGGGTCAGGATAAAAGTTTTGATCTTCCTGTGAAAAAGAAAAGTGACATATGTACTATAATGTACACAAGTGGAACTACTGGTGATCCCAAAGGAGTATTGATATCCAATGAGAGCATTATTACACTCTTAGCTGGCATAACGAAACTACTAGACTGTTGCAATGAATCATTAGTTGAGAAAGATAGATACCTATCATACCTTCCACTTGCACACATCTTTGACAGGGTTGTTGAAGAAGCAATGATTTGGACCGGTGCTTCAATAGGTTTCTGGCGTGGGGATGTCAAATTGTTGATGGAAGACATAGCCGAGTTAAAACCAACTATTTTTTGTGCTGTTCCCCGTGTGCTTGATAGAGTCTACACAGGTTTACAACAAAAGATTAATACGGGGGGCACGGTGAAAAATACGATGTTCAATTTAGCCTACACATACAAGTTGCATAACATGAAAAGAGGGCAAAAACATAATTCGGCGTCTCCATTAATGGACAAAGTTGTATTTAGTAAGGTAAAAGACGCTTTAGGGGGTAATGTACGTATTGTTTTGTCCGGAGCAGCGCCTCTATCTAAACATGTTGAAAGTTTCCTGCGTGTGGTGACTTGTTCTCATATTCTACAAGGATATGGTCTGACTGAAACATGCGCTGGATCCTTCGTGGCAATACCAAACGAAATAAATATGCTCGGTACGGTTGGCCCTCCTCTACCATATGTGGATGCATGTCTGGAATCTGTACCTGAAATGGGATATGATGCACTAGCAACCACACCAAGAGGAGAAATCTGTATTAAGGGAAGTACAGTTTTTTCAGGGTACCACAAACGTGAAGACCTCACCAAAGAGGTTATGATCGATGGATGGTTCCATACAGGAGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATCGATCGGAAGAAGAATATATTTAAGCTTTCACAAGGAGAATATGTTGCTGTTGAAAACCTGGAGAATATTTATGTTCAAGTTTCTGTTATTGAATCAATATGGGTCTATGGAAACAGTTTTGAGTTCTTCCTTGTGGCTGTTATTAACCCAAACAAGCAAGCACTTGAAGCTTGGGCAGGAAAAAATGACATGAAAATGGAGTTTGATTCTCTCTGTGAAGATTCTAGGACGAAAAGTTACATCCTTGAAGAGCTCGTAAAGATTGCGAAAGAAAAAAAGTTGAAAGGTTTTGAATTTATTAAAGCTGTTCATATTGATCCAGTTCCATTTGACATGGAACGTGATCTTATTACACCAACATTTAAGAAGAAGAGACCCCAGTTGCTTAAACACTACCAGAATATCATCGACGAGATGTACAAGGCGACAAATAAACCCAGTGCCTGA 1995 0.4 MAEENKSFIVEVEKAREAKDDRPSMGPVYRTTFSNDSSPPPIQGLDSCWDVFRMSVEKNPTNPMLGVREIVDGKPGKFKWQTYKEIYDKVIKVGNSIRACGYGEGVKCGIYGVNSPEWIMSMEACNAHGLYCVPLYDTLGAGAVEFIISHAEVSLAFVEEKKIPELLKTFPNAAKHLKTIVSFGKVTPEQKQEFEKFELIIYSWDEFLEVGQDKSFDLPVKKKSDICTIMYTSGTTGDPKGVLISNESIITLLAGITKLLDCCNESLVEKDRYLSYLPLAHIFDRVVEEAMIWTGASIGFWRGDVKLLMEDIAELKPTIFCAVPRVLDRVYTGLQQKINTGGTVKNTMFNLAYTYKLHNMKRGQKHNSASPLMDKVVFSKVKDALGGNVRIVLSGAAPLSKHVESFLRVVTCSHILQGYGLTETCAGSFVAIPNEINMLGTVGPPLPYVDACLESVPEMGYDALATTPRGEICIKGSTVFSGYHKREDLTKEVMIDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIYVQVSVIESIWVYGNSFEFFLVAVINPNKQALEAWAGKNDMKMEFDSLCEDSRTKSYILEELVKIAKEKKLKGFEFIKAVHIDPVPFDMERDLITPTFKKKRPQLLKHYQNIIDEMYKATNKPSA* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0566 664 Gene3D - 45 518 IPR042099 -
Tpr3g0566 664 MobiDBLite consensus disorder prediction 13 38 - -
Tpr3g0566 664 ProSitePatterns Putative AMP-binding domain signature. 229 240 IPR020845 -
Tpr3g0566 664 SUPERFAMILY Acetyl-CoA synthetase-like 44 658 - -
Tpr3g0566 664 Pfam AMP-binding enzyme 57 526 IPR000873 -
Tpr3g0566 664 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 658 - -
Tpr3g0566 664 CDD LC-FACS_euk 76 657 IPR045311 GO:0004467|GO:0006631
Tpr3g0566 664 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 4-LIKE 8 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0566 Tpr-Chr3 5591832 5598350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0566 4 664 Acyl Lipid Metabolism Gene Families AT4G23850 70.953 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0566 K01897 - gmx:100814965 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0566 3 5591832 5598350 Tpr3g0566 3 5591832 5598350 ECH
Tpr2g3919 2 41888181 41896415 Tpr3g0566 3 5591832 5598350 PCT