Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3919 ATGGCTGAACAGAAGAGATTCATCATTGAAGTCGAAAAAGCAAAAGAAGCAACTCAAGATACACCTTCAAGAGGACCTGCTTACCGTAGCATCTTTGCGAAAGATGGATTTCCCGCTCCTATTCAAGGTCTTGATAGTTGCTGGGATGTTTTTCGATTGTCTGTTGAGAAGTATCCAAATAATCCTATGCTTGGTACCCGAGAGATTGTGGATGGGAAGCATGGCAAGTACAAGTGGCTAACTTACAAAGAAGTATATGACATGGTGATCAAAGTCGGAAATTCCATCCGCAGCTGTGGTTATGGAGAAGGTGTAAAATGTGGTATTTATGGTGCCAATTCTGCAGAGTGGATTATGAGCATGGAGGCTTGCAATGCTCATGGACTTCTTTGTGTTCCTTTATATGATACCTTAGGTTTTGGAGCCATAGAATTTATTATATCCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAAAAGATACCTGAGCTGTTGAAGACATTTCCTAATGCTACCAAATATCTCAAGACCATTGTGAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAAGTTTGGGTTGACAATATATTCATGGAGTGAATTTTTACAATTGGGTGAAAGTCAGAGTTTTGATCTACCTACAAAGCAAAGAAGTGATATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTATTGATATCCAATGAGAGTATTATTACCCTCTTAGCTGGGGTTAAGCGGCTGTTGGAGAGTGTCAATGAAAAATTGGTTGTGAAAGATGTGTACTTATCATACCTTCCTCTCGCACATATCTTTGATAGGGTCATTGAGGAGACATTTATATGGCATGGTGCCTCGATAGGCTTCTGGCGTGGGGATGTTAAACTGTTAATTGAAGACCTTGGTGAGCTGAAACCAACTATTTTCTGTGCTGTACCCCGTGTACTTGATAGAGTGTACACAGGTTTGACACAGAAAATATCTTCTGGAGGCTTCCTGAAGAAGACATTATTCAACTTTGCTTTTTCATATAAGTTGAATAACATGAAGAAAGGGAAAAAGCATGACGCAGCATCTCCACTTCTTGACAAAGTTGTGTTTGATAAGGTGAAGCAAGGTTTAGGGGGTCATGTACGTCTTATTTTGTCTGGAGCAGCACCTCTATCTATGCATGTGGAAAATTACTTACGGGTGGTGACTTGTTCTCATGTCCTACAAGGATATGGTCTGACCGAAACCTGTGCGGGAACCTTTGTCTCATTACCTAATGAACTAGACATGCTGGGAACGGTGGGTCCTCCTGTACCCAATGTGGATGCGTGCCTGGAATCTGTTCCTGAAATGGGTTATGATGCCCTTGCAAGCACACCAAGAGGAGAAATTTGTGTAAAGGGTGATACCTTGTTTTCAGGATACTACAAGCGTGAAGACCTCACAAAAGAGGTTCTAATTGATGGATGGTTCCATACAGGGGATATTGGAGAGTGGCAACCTAATGGAGGCATGAAGATTATTGACCGGAAGAAGAATATATTCAAGCTTTCACAAGGAGAATATGTTGCCGTTGAAAACCTGGAAAATATTTTTAGCCAAGTTCCTTCTATTGAATCTATATGGGTTTACGGAAACAGTTTTGAGGCCTTCCTTGTTGCTGTTGTTACCCCCAGCAAGCAGGCACTTGAACATTGGGCAGAAGAAAATGGTATATCCACGGACTTCAATTCTCTCTGTGAAGATTCTAGGGCAAAAAGTTACATACTTGAAGAGCTCTCAAAGATTGGAAAGGAAAAGAAGTTGAAAGGATTTGAATTTATAAAAGCAGTTCATCTTGATCCAGTTCCATTAGATATGGAACGTGACCTTATCACTCCAACATATAAGAAGAAGAGGCCTCAGTTGCTTAAATATTATCAGAATGTGATTGATAACATGTACAAAAGTGGAACTAAACCCCGTGCCTGA 1992 0.4076 MAEQKRFIIEVEKAKEATQDTPSRGPAYRSIFAKDGFPAPIQGLDSCWDVFRLSVEKYPNNPMLGTREIVDGKHGKYKWLTYKEVYDMVIKVGNSIRSCGYGEGVKCGIYGANSAEWIMSMEACNAHGLLCVPLYDTLGFGAIEFIISHAEVSIAFAEEKKIPELLKTFPNATKYLKTIVSFGKVTPEQKQEVEKFGLTIYSWSEFLQLGESQSFDLPTKQRSDICTIMYTSGTTGDPKGVLISNESIITLLAGVKRLLESVNEKLVVKDVYLSYLPLAHIFDRVIEETFIWHGASIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYTGLTQKISSGGFLKKTLFNFAFSYKLNNMKKGKKHDAASPLLDKVVFDKVKQGLGGHVRLILSGAAPLSMHVENYLRVVTCSHVLQGYGLTETCAGTFVSLPNELDMLGTVGPPVPNVDACLESVPEMGYDALASTPRGEICVKGDTLFSGYYKREDLTKEVLIDGWFHTGDIGEWQPNGGMKIIDRKKNIFKLSQGEYVAVENLENIFSQVPSIESIWVYGNSFEAFLVAVVTPSKQALEHWAEENGISTDFNSLCEDSRAKSYILEELSKIGKEKKLKGFEFIKAVHLDPVPLDMERDLITPTYKKKRPQLLKYYQNVIDNMYKSGTKPRA* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3919 663 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 4 53 - -
Tpr2g3919 663 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 255 657 - -
Tpr2g3919 663 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 53 253 - -
Tpr2g3919 663 SUPERFAMILY Acetyl-CoA synthetase-like 44 657 - -
Tpr2g3919 663 CDD LC-FACS_euk 75 656 IPR045311 GO:0004467|GO:0006631
Tpr2g3919 663 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 53 253 - -
Tpr2g3919 663 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 53 - -
Tpr2g3919 663 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 255 657 - -
Tpr2g3919 663 Gene3D - 43 517 IPR042099 -
Tpr2g3919 663 Pfam AMP-binding enzyme 54 525 IPR000873 -
Tpr2g3919 663 ProSitePatterns Putative AMP-binding domain signature. 228 239 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3919 Tpr-Chr2 41888181 41896415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3919 1 657 Acyl Lipid Metabolism Gene Families AT4G23850 75.038 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3919 K01897 - gmx:100814965 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3919 2 41888181 41896415 Tpr3g0566 3 5591832 5598350 PCT