Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0553 ATGTCAAACAAAACCATTCTCGTCACCGGCGGAGCCGGTTACATCGGCAGCCACACCGTCCTCCAGCTTCTTCTCGGCGGTTACAAAGCCGTCATCGTAGATAATCTCGACAATTCTTCTCAAAAATCCATCGACAGAGTCAAACAACTCGCCGGCAATTTAGCCGGTAATCTTTCATTTCATAAGTTGGACTTACGGGATAGAAATGGGCTCGAGAGTATATTTTCTTCCACAAAGTTTGATGCGGTTATACATTTTGCTGGACTGAAAGCAGTCGGTGAAAGTGTGCAAAAACCACTGCTCTACTATGACAACAACTTAATTGGGACCATTATTCTATTTGAAGTCATGGCCGCCCATGGATGCAAGAAGCTTGTGTTCTCCTCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTCCCCTGCACTGAAGAGTTCCCTTTGTCAGCTGCAAGCCCATACGGAAGAACCAAGCTATACATTGAAGAATTTTGTCGTGATATCTACCGTTCAGATCCAGAGTGGAAAATAACACTGTTGAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTCAGATTGGCGAGGATCCCCGTGGAATTCCCAACAACCTCATGCCTTTTGTTCAGCAAGTTGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAACAGATTATAGTACAAGTGATGGAACTGGAGTTCGTGATTACATTCATGTTGTTGATCTAGCAGATGGGCACATTGCTGCATTGCGTAAACTAGATGATCCTAAGACAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCGGTTTTTGAGATGGTTAAAGCTTTCGAACAGACCTCTGGAAAGAAAATTCCAATTGTAAAGGCTGATCGGAGACCTGGAGATGCTGAAGTCGTTTATGCATCAACAGCAAAAGCAGAAAAAGAACTGAACTGGAAGGCAAAATATGGCATCGATGATATGTGCCGTGACCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTACGGTGAATCTAATTAA 1041 0.4438 MSNKTILVTGGAGYIGSHTVLQLLLGGYKAVIVDNLDNSSQKSIDRVKQLAGNLAGNLSFHKLDLRDRNGLESIFSSTKFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTIILFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAASPYGRTKLYIEEFCRDIYRSDPEWKITLLRYFNPVGAHPSGQIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGTDYSTSDGTGVRDYIHVVDLADGHIAALRKLDDPKTGCEVYNLGTGKGTSVFEMVKAFEQTSGKKIPIVKADRRPGDAEVVYASTAKAEKELNWKAKYGIDDMCRDQWNWASKNPYGYGESN* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0553 346 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 1 345 - -
Tpr3g0553 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 341 IPR036291 -
Tpr3g0553 346 PANTHER UDP-GLUCOSE 4-EPIMERASE 1 345 - -
Tpr3g0553 346 CDD UDP_G4E_1_SDR_e 5 334 IPR005886 GO:0003978|GO:0006012
Tpr3g0553 346 Pfam GDP-mannose 4,6 dehydratase 7 330 IPR016040 -
Tpr3g0553 346 Gene3D - 194 335 - -
Tpr3g0553 346 TIGRFAM galE: UDP-glucose 4-epimerase GalE 6 340 IPR005886 GO:0003978|GO:0006012
Tpr3g0553 346 Gene3D - 6 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0553 Tpr-Chr3 5500961 5505451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0553 5 319 Miscellaneous Gene Families AT4G00110 27.327 1.11e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0553 K01784 - csv:101205820 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0553 3 5500961 5505451 Tpr3g0553 3 5500961 5505451 ECH
Tpr2g3930 2 41948934 41952912 Tpr3g0553 3 5500961 5505451 PCT