Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3930 ATGGCTTCGCGCGTCACTTCTCCTTCTTATTTAAACTCTTCACGCTTTCTATCTCCTTCTAAATTTTCCAATACTTCATTCCAAATCCAAAACGGTGTCGCTTCCGCCATGCGAGACAAAACCGTTCTCGTTACTGGCGGTGCCGGTTATATCGGTAGTCACACCGTTCTTCAGCTTTTACTCGGTGGTTTTAAAGCTGTTGTTGTTGATAATCTTGATAATTCCTCTGAAGTTGCTTTACACAGAGTTAAAGAACTCGCCGCTGAATTCGGGAATAACCTCAATTTTCATAAGGTAGACCTCCGCGACAGGGATGCGCTAGAGCAAATTTTTGCTTCCACAAAATTTGATGCAGTCATACATTTTGCTGGAATGAAAGCAGTAGGTGAAAGTGTGCAGAAACCGTTACTCTACTATAACAACAACTTGATTGGGACAATCACTCTATTAGAAGTCATGGCTGCTCATGGATGCAAGAAGCTTGTGTTCTCTTCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCGTGTACAGAAGAGTTTCCTCTGTCAGCAGCAAACCCATATGGACGAACCAAGCTTACTATTGAAGAAATTTGCCGTGATGTCCAACATGCTGATCCAGATTGGAAAATTATATTATTGAGATATTTCAATCCTGTGGGTGCACACCCTAGTGGTTATATTGGAGAGGATCCTCGCGGAATTCCTAACAATCTCATGCCATTTATTCAGCAAGTAGCGGTTGGCAGACGACCTGCACTGACAGTTTTTGGAACTGATTATAATACAGTTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTGGATTTAGCAGATGGCCACATTGCTGCATTGCTTAAACTAGAAGAAGCTAATATAGGCTGTGTGGTTTATAACTTGGGGACAGGAAAGGGAACATCAGTTTTGGAGATGGTCAGAGCTTTTGAACAGGCATCTGGAAAGCAAATTCCACTTGTGAAGGCTGGCCGTAGACCTGGCGATGCTGAAATTGTTTATGCATCAACAAAAAAAGCTGAAAGAGAACTCAAGTGGAAGGCAAAATATGGAATAGATGAAATGTGCCGTGATCAATGGAACTGGGCCAGCCAAAATCCTTACGGCTATGGATCTCCAGATTCCTCGGATTAG 1158 0.4301 MASRVTSPSYLNSSRFLSPSKFSNTSFQIQNGVASAMRDKTVLVTGGAGYIGSHTVLQLLLGGFKAVVVDNLDNSSEVALHRVKELAAEFGNNLNFHKVDLRDRDALEQIFASTKFDAVIHFAGMKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVQHADPDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFIQQVAVGRRPALTVFGTDYNTVDGTGVRDYIHVVDLADGHIAALLKLEEANIGCVVYNLGTGKGTSVLEMVRAFEQASGKQIPLVKAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASQNPYGYGSPDSSD* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3930 385 PANTHER UDP-GLUCOSE 4-EPIMERASE 37 382 - -
Tpr2g3930 385 TIGRFAM galE: UDP-glucose 4-epimerase GalE 42 376 IPR005886 GO:0003978|GO:0006012
Tpr2g3930 385 Gene3D - 42 311 - -
Tpr2g3930 385 Pfam GDP-mannose 4,6 dehydratase 43 366 IPR016040 -
Tpr2g3930 385 Gene3D - 230 371 - -
Tpr2g3930 385 CDD UDP_G4E_1_SDR_e 41 370 IPR005886 GO:0003978|GO:0006012
Tpr2g3930 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 377 IPR036291 -
Tpr2g3930 385 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 37 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3930 Tpr-Chr2 41948934 41952912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3930 38 355 Miscellaneous Gene Families AT4G00110 27.596 1.59e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3930 K01784 - gmx:100818509 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3930 2 41948934 41952912 Tpr2g3930 2 41948934 41952912 ECH
Tpr2g3930 2 41948934 41952912 Tpr3g0553 3 5500961 5505451 PCT