Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0550 ATGGCGGATAGACCCATCATTCCCACCACCACCGCCCCCGCCCCCACCACCAGACCAAAGAGACCACGACCACCGTCAGGACGTACCAACCTAGCCTCATGTGTAGTAGCCACAATCTTCTTACTTTTCATCATCATCGTCATCCTCATAGTATACTACACAGTTTTCAAACCACAAGATCCAAAAATCGCCGTCAACGCCGTTCAACTTCCATCATTCTCCGTCATTAACGGCACCGTCAATTTCACTTTTTCCCAATACGCTTCCGTTAGAAACCCTAACCGAGCTGCTTTCTCTCACTACGACAGCTCACTTCAAATCCTCTATTCCGGCAGTCAAGTCGGGTTCATGTTCATTCCCGCCGGCGAGATCGACGCCGGAAGAACACAATACATGGCAGCTACTTTCTCTGTTCAGTCTTTTCCGTTGTCGGCACCGCCTAATATGGGTCCCACACTGGCGAATGGTGATGGTGTTGGGTTTAACTTTGGATTGAGAGTTCAACCGACGATGGAGATTGAGACGAAACTGGAAATGGCGGGACGTGTTAGGGTTTTGCATTTCTTCAGTCATCGTGTTAAGGTCAGAACTGGTTGCAGAATCGCCATTGCCGTCAATAATGGTGCTGTGTTAGGTTTTCACTGTTAA 648 0.4877 MADRPIIPTTTAPAPTTRPKRPRPPSGRTNLASCVVATIFLLFIIIVILIVYYTVFKPQDPKIAVNAVQLPSFSVINGTVNFTFSQYASVRNPNRAAFSHYDSSLQILYSGSQVGFMFIPAGEIDAGRTQYMAATFSVQSFPLSAPPNMGPTLANGDGVGFNFGLRVQPTMEIETKLEMAGRVRVLHFFSHRVKVRTGCRIAIAVNNGAVLGFHC* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0550 215 PANTHER OS05G0238400 PROTEIN 22 215 - -
Tpr3g0550 215 MobiDBLite consensus disorder prediction 1 27 - -
Tpr3g0550 215 Pfam Late embryogenesis abundant protein 89 197 IPR004864 -
Tpr3g0550 215 SUPERFAMILY LEA14-like 41 141 - -
Tpr3g0550 215 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 22 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0550 Tpr-Chr3 5483122 5483945 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0550 - - cam:101495352 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0550 3 5483122 5483945 Tpr3g0550 3 5483122 5483945 ECH
Tpr2g3936 2 41997686 41998724 Tpr3g0550 3 5483122 5483945 PCT