Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6080 ATGAAGTTTTCAGTGTTTTTGTTTATAGGGTTTGTGTTGACTGGTATGTCAATGGCCAGATTCGTAGTTGAGAAGAACAGTTTGTCGGTTACTTCGCCTGATAAAATTAAAGGCAAACAAGACAGTGCCATCGGTAACTTCGGTATACCTCAATACGGTGGTAGCATGGTCGGTAATGTCGTTTACCCTAAAGATAACAATAAGGGTTGTAAAGACTTCGATCAATCTTTCAAATCACACCCTGGTGCTCTTCCCACAATCCTTTTGCTCGATCGTGGAAATTGCTTTTTTGCTTTGAAGGTTTGGAATGCACAGAAGGCTGGAGCTTCTGCAGTTCTAGTTGCCGATGATATCGAAGAACCCTTAATTACTATGGACACACCTGAAGAGGATGGGTTGTCTGCTAAATACATTGAGAACATAACAATACCATCTGCTCTTATTGGTAAAAGTTTTGGTCAGAAATTGAAGGATGCCATAAGTGGTGGGGATATGGTCAATGTTAATCTTGACTGGAGAGAGGCTGTTCCTCACCCTGATGATCGTGTCGAGTATGAGTTGTGGACAAACAGCAATGATGAATGTGGAGTTAAATGTGATATGTTGATTGAATTTTTGAAGGATTTCAAGGGTGCCGCACAGATCTTAGAGAAAGGAGGTTACACTCAGTTTACACCTCATTATATAACTTGGTACTGTCCTCATGCATTTACATTGAGTAAACAGTGTAAGTCCCAATGCATAAACCATGGAAGATATTGTGCACCAGATCCTGAGCAGGACTTCAGCACAGGTTATGATGGGAAAGATGTGGTTGTTGAAAATTTGAGGCAGCTATGTGTTTTCAAGGTGGCTAAACAAGCTGAAAAGTCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCTATGAAAGAGAAAAAGTACAACAAGGAATGTGCAAATGCTGTCATTAAATCTCTGGGTCTTGACATCGCAAAGATTGACAAATGCATGGGAGACCCTGATGCCGATGCTGAAAATTCCATTTTGAAAGAAGAGCAAGATGCCCAAATTGGGAAGGGATCACGTGGTGATGTTACTATATTGCCTACACTTGTCGTCAATAACAGACAATATCGAGGTAAACTGGAGAAAGGTGCTGTTCTAAAGGCTATTTGTTCCGGATTTGAAGAAACTACTGACCCAGCTGTTTGTTTGAGCAACGATGTGGAGACAAATGAGTGCTTGACAAACAACGGTGGTTGTTGGCAGGATAAAGCAGCTAATATCACTGCATGCAAGGATACATTCCGTGGGCGAGTATGTGAATGCCCCTTGGTTGATGGTGTGCAATTCAAAGGAGACGGTTATACAACTTGTGAAGTCGGTGGACCTGGACGTTGCAAGATTAACAATGGAGGCTGTTGGCACGATGCCCGGAATGGACATGCATTTTCTGCTTGTTTGGATGATGGGGGAGTTAAATGTCAGTGTCCTACCGGGTTTAAAGGCGACGGTGTAAAAAATTGTGAAGACATTGATGAATGCAAAGAGAAGAAAGCTTGTCAGTGTCCTGAATGTAGCTGCAAAAATACTTGGGGCAGCTATAACTGCAGTTGCAGCGGAAATCTCCTGTATATCAAGGACCATGATACCTGCATAAGTCAAACTGCCAGTCAGGCAAAATCCAGTTGGGCTGCTTTTTGGGTCATTTTGATTGGATTGGGTATGATTGCTGGAGGGGGTTTCCTTGTGTACAAATATAGAATTAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGCAGAATTTCCAAATCACGACAATCATGAAAGAACTTGA 1863 0.4208 MKFSVFLFIGFVLTGMSMARFVVEKNSLSVTSPDKIKGKQDSAIGNFGIPQYGGSMVGNVVYPKDNNKGCKDFDQSFKSHPGALPTILLLDRGNCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDGLSAKYIENITIPSALIGKSFGQKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVFKVAKQAEKSWVWWDYVTDFQIRCPMKEKKYNKECANAVIKSLGLDIAKIDKCMGDPDADAENSILKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTDPAVCLSNDVETNECLTNNGGCWQDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEVGGPGRCKINNGGCWHDARNGHAFSACLDDGGVKCQCPTGFKGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYNCSCSGNLLYIKDHDTCISQTASQAKSSWAAFWVILIGLGMIAGGGFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEFPNHDNHERT* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6080 620 Pfam Complement Clr-like EGF-like 492 512 IPR026823 -
Tpr2g6080 620 Gene3D - 18 179 - -
Tpr2g6080 620 CDD EGF_CA 509 537 - -
Tpr2g6080 620 SUPERFAMILY PA domain 71 166 IPR046450 -
Tpr2g6080 620 SMART egfca_6 509 551 IPR001881 GO:0005509
Tpr2g6080 620 ProSitePatterns EGF-like domain signature 2. 493 507 IPR000742 -
Tpr2g6080 620 Gene3D Laminin 514 551 - -
Tpr2g6080 620 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 12 599 - -
Tpr2g6080 620 Gene3D Glutaredoxin 230 392 - -
Tpr2g6080 620 Pfam PA domain 58 156 IPR003137 -
Tpr2g6080 620 Gene3D Laminin 463 513 - -
Tpr2g6080 620 ProSitePatterns Calcium-binding EGF-like domain signature. 509 535 IPR018097 GO:0005509
Tpr2g6080 620 CDD PA_VSR 46 170 - -
Tpr2g6080 620 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 12 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6080 Tpr-Chr2 73868310 73872615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6080 19 620 Miscellaneous Gene Families AT2G14740 82.810 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6080 - - gmx:100820115 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g6080 2 73868310 73872615 Tpr1g0489 1 4120665 4126146 PCT