Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0489 ATGAAGATTCCAAGTTCTTCTTCTCTGGGTTTATTTCTAGGGTTTCTATTACTATCGTTGACGCCATCGTCAATGGCTAAATTCGTGGTGGAGAAGAATAGCTTGAGGGTTACTTCGCCGGATAGTATCAAAGGAACATACGATAGTGCGATTGGCAACTTTGGAATACCTCAATACGGTGGTAGCATGGCTGGTAACGTTGTGTTTCCTAAGGAAAATCAGAAGGGTTGTAAAGAGTTTGATGATTCTGGAATTTCCTTCAAATCTAAGCCTGGTGCTCTTCCCACAATCGTTTTGCTCGATCGTGGAAATTGCTTCTTTGCTTTGAAGGTGTGGAATGCCCAGAAGGCTGGCGCTTCTGCTGTTCTTGTTGCGGATGATATTGAGGAAAAATTAATAACCATGGACACACCTGAAGAGGATGGATCATCTGCTAAATATATAGAGAACATAACAATACCATCGGCTCTCATTGAAAAGAGTTTTGGTGCAAAGTTAAAGAGTGCCATAAGTAGTGGGGAGATGGTCAATGTAAATCTTGATTGGAGAGAGGCCGTCCCCCACCCAGATGATCGTGTGGAGTATGAGCTGTGGACCAACAGCAATGATGAATGTGGAGTTAAATGCGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGCTGCACAAATATTGGAGAAAGGTGGTTATACTCAGTTTACACCTCACTATATAACTTGGTACTGTCCTCAGGCATTCACGTTAAGCAAGCAGTGCAAGTCTCAGTGCATTAACCATGGAAGATATTGTGCTCCAGATCCTGAGCAAGATTTCAGCACTGGTTATGATGGGAAAGACGTGGTTATTGAAAACTTGAGGCAGTTGTGTGTTTTCAAGGTTGCAAATGAAACGAAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATCAGGTGCCCTATGAAGGAGAAAAAATACAACAAGAAATGTGCAGATGCTGTTATTGAATCACTTGGTCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAGATGCCGATTCCGAAAATTCTGTTTTGAAAGAAGAGCAAGATGCCCAAGTTGGGAAGGGATCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAACAGTCGACAGTATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCCATTTGTTCTGGTTTTGAAGAAACTACTGAGCCAGCTGTTTGTTTGAGCAGCGATGTGGAGACAAATGAGTGCTTGTCGAACAATGGTGGTTGTTGGTTGGATAAAGGAGCTAACATAACTGCATGCAAGGATACTTTCCGTGGACGAGTATGTGAATGCCCCTTAGTAGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACATGCGAAGCTAGTGGACCAGGACGGTGCAAGATAAACAATGGAGGTTGTTGGCATGAAGCCCGCAATGGACATGCATTTTCTGCTTGTTCGGATAACGGAGGGGTTAAATGCGAGTGTCCTGCAGGGTTTAAAGGTGACGGTGTTAAGAATTGTGAAGACATTGATGAATGCAAAGACAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACCTGGGGCAGCTATAACTGCACTTGTAGTGGGGATCTTCTCTATATCAGGGACCATGATACCTGCATAAGTAAAAGTGCCGCTAGTCAGGAAGGAAAGTCTGCTTGGGCTGCATTTTGGGTCATTATAATCGGCTTAGTTTTGGCTGCTTCAGGGGGATACCTTGTCTACAAATATAGAATAAGGTCATACATGGATTCTGAAATAAGGGCCATCATGGCACAGTATATGCCTTTGGATAGCCAAGGAGAAGTTGTAAATCATGTTAACGACGAAAGAGCATGA 1899 0.4292 MKIPSSSSLGLFLGFLLLSLTPSSMAKFVVEKNSLRVTSPDSIKGTYDSAIGNFGIPQYGGSMAGNVVFPKENQKGCKEFDDSGISFKSKPGALPTIVLLDRGNCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGAKLKSAISSGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIERCMGDPDADSENSVLKEEQDAQVGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSDVETNECLSNNGGCWLDKGANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHEARNGHAFSACSDNGGVKCECPAGFKGDGVKNCEDIDECKDKKACQCPECSCKNTWGSYNCTCSGDLLYIRDHDTCISKSAASQEGKSAWAAFWVIIIGLVLAASGGYLVYKYRIRSYMDSEIRAIMAQYMPLDSQGEVVNHVNDERA* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0489 632 ProSitePatterns EGF-like domain signature 2. 503 517 IPR000742 -
Tpr1g0489 632 SMART egfca_6 519 561 IPR001881 GO:0005509
Tpr1g0489 632 Gene3D - 25 189 - -
Tpr1g0489 632 Pfam Complement Clr-like EGF-like 502 522 IPR026823 -
Tpr1g0489 632 Gene3D Laminin 412 468 - -
Tpr1g0489 632 MobiDBLite consensus disorder prediction 349 369 - -
Tpr1g0489 632 Pfam PA domain 64 166 IPR003137 -
Tpr1g0489 632 CDD PA_VSR 53 180 - -
Tpr1g0489 632 MobiDBLite consensus disorder prediction 349 366 - -
Tpr1g0489 632 CDD EGF_CA 519 547 - -
Tpr1g0489 632 ProSitePatterns Calcium-binding EGF-like domain signature. 519 545 IPR018097 GO:0005509
Tpr1g0489 632 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 15 611 - -
Tpr1g0489 632 SUPERFAMILY PA domain 60 158 IPR046450 -
Tpr1g0489 632 Gene3D Laminin 473 553 - -
Tpr1g0489 632 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0489 Tpr-Chr1 4120665 4126146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0489 26 632 Miscellaneous Gene Families AT2G14740 84.185 0.0 1089
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0489 - - gmx:100803958 1221.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0489 1 4120665 4126146 Tpr1g0489 1 4120665 4126146 ECH
Tpr2g6080 2 73868310 73872615 Tpr1g0489 1 4120665 4126146 PCT