Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr2g4353 | ATGGGAAATTCTTTTGGGTGTTCAGCTTCTGGTGAGAGATTGGTATCTGCTGCAAGAGATGGTGATTTGATTGAAGCAAAGATGCTTTTGGAATTCAATCCTGGTCTTGCAAAGTATTCAACTTTTGGTGGTCTTAATTCACCTCTTCATTTTGCAGCTTCTAAGGGTCATAACGAGATTGTGGCATTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGAAATTATTGTGGGCAGACAGCTTTGATGCAAGCTTGTAGACATGGTCATTGGGAAGTTGTACAAACCCTTATGCTCCACCGATGCAATGTTATGAAAGCAGATTATCTCAGTGGAAGGACCGCTCTTCACTTTGCAGCTGTCAGTGGGCATGTAAGATGCATTAGACTTGTTGTGGCTGACTTTGTTTCAAGTGTTCCTTATGAAACTCTACATGCTCGTGTCGATGCTGACGTGGGTGATGGATTAAATACAAAAAGAAAACAGGAACAAAGTGCATTATGCAAGTTTGTAAACAAGACAGCTGATGCTGGTATTACTGCACTTCATATGGCGGCGTTAAACGGATATTTTGATTGTGTACAACTGCTACTGGATCTTAATGCATACGTGTCAGCTTCAACATATCATTATGGAACATCTATGGATTTAATAGGGGCCGGAAGCACTCCGTTGCATTACGCTGCTTGTGGTGGAAATTTAAAATGCTGTCAGATCCTCCTTTCAAAAGGTGCTACTCGGATGGCTTTGAACTGCAATGGGTGGCTTCCACTTGATGTTGCTAGGATGTGGGGCCGTCATTGGCTTGAACCGTTGCTGTCACCCAGTTCAGATACTGTTGTATCACCATTCCCTACTTCAAATTTTTTGTCCTTGCCCCTCATGAGTGTTCTCAACATAGCCAGAGAATGTGGATTGCACTCATCTACGACCTCCTCCAATGAGATCGACTTCTGTGCTGTCTGCTTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTATGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAGCCAATGTTTCTTCTGAAATGCATGTCCCTCCTGGTTCTATTCCTTGTCCCCTTTGTCGACACGGAATTATTTCTTTCGTCAAGTTACCAAGTTTCAAACCAAAAGAAAATAAATTACATGGTTCACTCAGCATGTGTACACCATGCATACAGCATCCACGCGATGTAGATCAACCATCTCTTTCTCATAGTACACCAGAAATTCGAAAAAACCGGGTAGCTTCTGTTTCTTCTGAGATGCTGTGTCCTGTCACTTGTACACCGTTTCCATCCGTAGCAATTCCTCTATGTACTACATGCAATGATGGTCCTTGTCCACCATTTGAACCTCAGGAAGATGAAGCACAAGATGAATCTCCTCGTCACTCACAAGCTTCGACAACAGATCAAGATAAAATGGAAGGGCCAAAACTGGTGAAAACAACATGTTCAAGTATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGAATCAATGCAATTCAGAAATAAATGCTTGA | 1545 | 0.4272 | MGNSFGCSASGERLVSAARDGDLIEAKMLLEFNPGLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRHGHWEVVQTLMLHRCNVMKADYLSGRTALHFAAVSGHVRCIRLVVADFVSSVPYETLHARVDADVGDGLNTKRKQEQSALCKFVNKTADAGITALHMAALNGYFDCVQLLLDLNAYVSASTYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLSKGATRMALNCNGWLPLDVARMWGRHWLEPLLSPSSDTVVSPFPTSNFLSLPLMSVLNIARECGLHSSTTSSNEIDFCAVCLERPCSVAAEGCMHELCVRCALYLCSTANVSSEMHVPPGSIPCPLCRHGIISFVKLPSFKPKENKLHGSLSMCTPCIQHPRDVDQPSLSHSTPEIRKNRVASVSSEMLCPVTCTPFPSVAIPLCTTCNDGPCPPFEPQEDEAQDESPRHSQASTTDQDKMEGPKLVKTTCSSMFWGRRSCSRENQCNSEINA* | 515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr2g4353 | 514 | SUPERFAMILY | Ankyrin repeat | 14 | 273 | IPR036770 | - | |
| Tpr2g4353 | 514 | Pfam | Ankyrin repeats (3 copies) | 215 | 266 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 111 | 132 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 177 | 206 | - | - | |
| Tpr2g4353 | 514 | ProSiteProfiles | Zinc finger RING-type profile. | 319 | 369 | IPR001841 | - | |
| Tpr2g4353 | 514 | MobiDBLite | consensus disorder prediction | 463 | 485 | - | - | |
| Tpr2g4353 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 177 | 209 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 44 | 76 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | MobiDBLite | consensus disorder prediction | 457 | 485 | - | - | |
| Tpr2g4353 | 514 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 387 | IPR013083 | - | |
| Tpr2g4353 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 220 | 252 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | PANTHER | HOMEOBOX PROTEIN WARIAI | 1 | 514 | - | - | |
| Tpr2g4353 | 514 | Pfam | Ankyrin repeats (many copies) | 46 | 97 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | Pfam | Ankyrin repeats (many copies) | 112 | 198 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 220 | 245 | - | - | |
| Tpr2g4353 | 514 | Gene3D | - | 142 | 279 | IPR036770 | - | |
| Tpr2g4353 | 514 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XBOS32 | 1 | 514 | - | - | |
| Tpr2g4353 | 514 | Gene3D | - | 6 | 136 | IPR036770 | - | |
| Tpr2g4353 | 514 | SUPERFAMILY | RING/U-box | 318 | 375 | - | - | |
| Tpr2g4353 | 514 | ProSitePatterns | Zinc finger RING-type signature. | 334 | 343 | IPR017907 | - | |
| Tpr2g4353 | 514 | SMART | ANK_2a | 220 | 252 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | SMART | ANK_2a | 77 | 106 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | SMART | ANK_2a | 44 | 73 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | SMART | ANK_2a | 177 | 206 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | SMART | ANK_2a | 111 | 141 | IPR002110 | GO:0005515 | |
| Tpr2g4353 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 111 | 132 | - | - | |
| Tpr2g4353 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 44 | 75 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr2g4353 | Tpr-Chr2 | 47334118 | 47341645 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr2g4353 | 14 | 276 | Miscellaneous Gene Families | AT2G31820 | 28.358 | 1.83e-13 | 71.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr2g4353 | K19044 | - | gmx:100812809 | 899.812 |
Event-related genes