Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0718 ATGGGTAATTCCTTTGGATGTTCCGCCTCCGGCGAGAGACTTGTATCGGCGGCCAGAGACGGCGACCTTGTGGAAGCAAAGATGCTTTTGAACTGTAACCCTTGTCTTGCTAAATACTCCACTTTTGGTGGTCTTAATTCTCCTCTTCATTTTGCATCTGCAAAGGGTCATAACGAGATTGTTGCATTGTTGCTTGAGAATGGTGCTGATGTTAATTCAAGAAATTACTCTGGCCAGACGGCCTTGATGCAAGCTTGTAGATATGGGCATTGGGAAGTTGCACAGACACTTCTACTCTTCAGATGCAATGTTATGAGAGCAGATTATCTCAGTGGGAGGACAGCTCTTCACTTTGCAGCGATGAACGGGCATGTAAGATGTATTAGACTTGTTGTGGCCGACTTTGTTCCAAGTGCTCCGTATGAAGCGATACGTGCTCACTCAGATGCCGCTGACAAGGGTGGTGGATCAAATGTGAAAAGCAAACATGAGCAAAGTGCCCTGTCGAAGTTTGTAAATAAGACTGCTGATGGTGGTATCACTGCCCTTCATATGGCTTCATTAAATGGATACTTTGATTGTGTGCAACTGCTACTAGATCTTAATGCAAATTTGTCTTCTGTGACATTTCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCTTTGCATTACGCTGCTTGTGGGGGAAATTTAAAATGCTGTCAGGTCCTCCTTGCAAGGGGTGCAAGTCGGACTGCTTTGAATTGCAACGGGTGGCTTCCTCTTGATATTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCGTTGTTAGCACCTAGTTCTGATGCCGTAACACCTGCCTTCCCTCATTCAAATTATTTGTCCTTGCCTCTCATGAGTGCTCTCAACATAGCCAGAGAGTTTGGATTGCAATCATCTACAACTTCCTCTGATGAGATCGACTTTTGTGCTGTATGCCTAGAGAGGCCATGTTCAGTGGCTGCTGAAGGATGTGGACATGAACTTTGTGTGAGATGTGCGCTCTATCTTTGCTCGACAAGTAACGTTTCTTCTGAAATGCTTGGCCCTCCTGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAATTGTCTCATTTGTCAAGTTGCCAGGTTCGCAAGCAAAAGAAAATAAATTACATGTGTCCCTTGGCCTCTGTACTCCATGCATGCTACATCCACGTGACATAGATCAGATGTCTCTTTCTCACACTCCAGAGATCCAAAGAAACTGTGTTGATTCTGTTCCTTCAGAGTTACTATGCCCCGTCACGTGTAGTCCATTTCCATCTATGGCAATACCTCTATGCACCTGCAATGATGGTACGTGTCCATCATTTGAACCACGATGTGTGGAAACACGAGATGAATCACCTCATCACTTACAAGAGTCCACAACAGATCAGGATAAAATTGAAGGCCCGAGACTGGATAAAACAACTTGCTCGAACATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAGATAAATGCTTAA 1542 0.4514 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFASAKGHNEIVALLLENGADVNSRNYSGQTALMQACRYGHWEVAQTLLLFRCNVMRADYLSGRTALHFAAMNGHVRCIRLVVADFVPSAPYEAIRAHSDAADKGGGSNVKSKHEQSALSKFVNKTADGGITALHMASLNGYFDCVQLLLDLNANLSSVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQVLLARGASRTALNCNGWLPLDIARMWGRHWLEPLLAPSSDAVTPAFPHSNYLSLPLMSALNIAREFGLQSSTTSSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTSNVSSEMLGPPGSIPCPLCRHGIVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDIDQMSLSHTPEIQRNCVDSVPSELLCPVTCSPFPSMAIPLCTCNDGTCPSFEPRCVETRDESPHHLQESTTDQDKIEGPRLDKTTCSNMFWGRRSCSREHQCNSEINA* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0718 513 ProSiteProfiles Ankyrin repeat profile. 178 210 IPR002110 GO:0005515
Tpr1g0718 513 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Tpr1g0718 513 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Tpr1g0718 513 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Tpr1g0718 513 ProSiteProfiles Zinc finger RING-type profile. 320 370 IPR001841 -
Tpr1g0718 513 Pfam Ankyrin repeats (many copies) 221 262 IPR002110 GO:0005515
Tpr1g0718 513 Gene3D - 6 141 IPR036770 -
Tpr1g0718 513 PANTHER HOMEOBOX PROTEIN WARIAI 1 513 - -
Tpr1g0718 513 Gene3D - 142 270 IPR036770 -
Tpr1g0718 513 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Tpr1g0718 513 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Tpr1g0718 513 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
Tpr1g0718 513 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Tpr1g0718 513 ProSiteProfiles Ankyrin repeat region circular profile. 178 206 - -
Tpr1g0718 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 389 IPR013083 -
Tpr1g0718 513 SMART ANK_2a 111 141 IPR002110 GO:0005515
Tpr1g0718 513 SMART ANK_2a 178 207 IPR002110 GO:0005515
Tpr1g0718 513 SMART ANK_2a 44 73 IPR002110 GO:0005515
Tpr1g0718 513 SMART ANK_2a 77 106 IPR002110 GO:0005515
Tpr1g0718 513 SMART ANK_2a 221 250 IPR002110 GO:0005515
Tpr1g0718 513 Pfam Ankyrin repeats (many copies) 159 199 IPR002110 GO:0005515
Tpr1g0718 513 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Tpr1g0718 513 ProSiteProfiles Ankyrin repeat region circular profile. 221 247 - -
Tpr1g0718 513 SUPERFAMILY RING/U-box 316 376 - -
Tpr1g0718 513 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Tpr1g0718 513 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0718 Tpr-Chr1 6083804 6088362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0718 46 306 Miscellaneous Gene Families AT1G07710 25.182 1.30e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0718 K19044 - gmx:100785638 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0718 1 6083804 6088362 Tpr1g0718 1 6083804 6088362 ECH
Tpr2g4353 2 47334118 47341645 Tpr1g0718 1 6083804 6088362 PCT