Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3408 ATGAAGCATACAAAAATTTCTTTCTTGCTATTATTATTTTTGTGGGTTTGTTCAGTGACTGGCTCAGTGACCTATGATCACAAGGCCATTGTTGTTAATGGACAGAGAAGACTTTTAATTTCTGGGTCCATTCATTATACAAGAAGTACACCTCAGATGTGGCCAGAACTTATTCAAAAGGCCAAAGATGGAGGCTTAGATGTTATACAAACTTATGTATTTTGGAATGGACATGAACCTTCTCCTGGTCAGTATTATTTTGAGGATAGGTACGATTTGGTTAAGTTCATCAAGGTGGTGCAACAAGCTGGCCTTTTAGTTCATCTACGCATTGGTCCCTACGCATGTGCTGAATGGAACTTGGGGGGATTTCCTGTTTGGCTTAAGTATGTCCCGGGTATTGCATTCAGAACAGACAATGAGCCTTTCAAGGCGGCAATGCAAAATTTTACTACTAAGATTGTCGACATGATGAAGGCAGAGAAATTGTTTCAAACGCAGGGAGGTCCAATAATTTTGTCTCAGATAGAAAACGAGTATGGACCAGTGGAGTGGGAAATTGGTGCTCCTGGGAAAGCTTACACGAAATGGTTTGCTCAAATGGCTGTAAGTTTAGATACAGGTGTACCATGGATTATGTGCAAGCAAGAAGATGCTCCTGATCCTATTATTGATACTTGTAATGGTTACTACTGTGAAAGCTTCATGCCCAACAAGAACTTCAAACCCAAAATGTGGACTGAAAATTGGACTGGCTGGTACACAGAGTTTGGTGGTGCAGTTCCACGTAGATCAGCAGAAGACACGGCATTCTCTGTTGCAAGATTTGTACAAAATGGTGGCTCATTTGTTAACTACTATATGTATCATGGAGGAACCAACTTTGATAGAACATCTGGTGGACCCTTCATTGCTACAAGCTATGACTTTGATGCCCCTCTTGATGAATTTGGACTTTTGAACCAACCAAAATGGGGGCATTTAAGAGATTTACATAAAGCAATTAAGCTATGTGAACCAGCTTTATTGTCTGTTGATCCCACAGTAACTTGGCCAGGAAAAAATCTAGAGGTACATGAATTCAAGACAAATATTACTGGTGTTTGTTCTGCATTCCTTGCGAATTATGATACCAAATATCCGGCGACAGTTAAATATGGGGACGGACAATATGAACTGCCACCTTGGTCAGTTAGCATTCTTCCTAACTGCAAAACTGCAGTTTTCAACACTGCAAGGCTTGGTACTCAAAGTTCCTCAATGAAGATGACTGCTGCAAACAGTGCATTTTATTGGCAGTCATATAATGAAGAACCAGCATCATCCGATGAACGCGATTCCATCACAGCGTATGCATTATGGGAGCAGATAAACGTCACCCGAGATTCTACTGATTATTTGTGGTATATGACAGATGTCAACATTGATCCAAATGAAGGCTTTATAAAAAATGGACAATCTCCTCTACTTACAATAATGTCAGCAGGTCATGCTATGCATGTATTCATTAATGGTCAACTTTCAGGTACTGTGTATGGTTCATTGGAGTTTCCTAAATTAACATTTAGTAAGAATGTTAATCTAAGGATTGGAAATAACAAGATCTCTTTACTTAGTATTACTGTCGGTCTCCCGAATGTCGGCGTGCACTTTGAGACATGGAATGCCGGGGTGTTAGGCCCGGTCACACTCGAGGGACTAAACGAGGGTACCAGAGACTTGTCTCGACAAAAATGGTCTTACAAGATTGGTCTTGAGGGTGAAGCCTTAAAACTTCACACTCTAAGTGGAAGCACATCAGTTAGATGGGTACAAGGATCATTATTGGCTATAAGAAAACCTTTGACATGGTACAAGGCATTTTTTAGAACACCAGCAGGCAATGATCCATTAGCTCTAGATATGAGCAGTATGGGAAAGGGTCAAGTATGGATAAACGGTCGTAACATCGGACGACATTGGCCAGGATATATAGCACGCGGTAAATGTGAGGATTGTTATTATGCCGGAACTTATACCGAAACAAAATGTCGGACGAATTGCGGACAACCCTCACAGAAATGGTACCATGTTCCTAGGTCATGGTTGAACCCAAGAGGGAACTATTTGGTTGTGTTTGAAGAATGGGGAGGTGACCCTAATGGAATATCTTTGGTGAAAAGAACAACAGGAAGTGTTTGTGCTGATATATATGAAAATCAACCAACACTTAGGAACAATGTTACTAGACTAGCTGATTTGTGGTGTCCCATTGGACAAAAGATCTCCCAAATTAAATTTGCTAGCTATGGATTGCCACAAGGAACTTGTGGAAACTATAGAGAGGGGAGTTGTCATGCTCACAAATCATATGATGCTCCTCAAAGGGACTGCATTGGCAAGCAATCTTGCATGGTAACTGTAGCTCCAGAAAATTTTGGGGGAGACCCATGTCCAGGAATTGCAAAGAAGTTCTCAGTTGAGGCCCTATGTAGCTAG 2478 0.4104 MKHTKISFLLLLFLWVCSVTGSVTYDHKAIVVNGQRRLLISGSIHYTRSTPQMWPELIQKAKDGGLDVIQTYVFWNGHEPSPGQYYFEDRYDLVKFIKVVQQAGLLVHLRIGPYACAEWNLGGFPVWLKYVPGIAFRTDNEPFKAAMQNFTTKIVDMMKAEKLFQTQGGPIILSQIENEYGPVEWEIGAPGKAYTKWFAQMAVSLDTGVPWIMCKQEDAPDPIIDTCNGYYCESFMPNKNFKPKMWTENWTGWYTEFGGAVPRRSAEDTAFSVARFVQNGGSFVNYYMYHGGTNFDRTSGGPFIATSYDFDAPLDEFGLLNQPKWGHLRDLHKAIKLCEPALLSVDPTVTWPGKNLEVHEFKTNITGVCSAFLANYDTKYPATVKYGDGQYELPPWSVSILPNCKTAVFNTARLGTQSSSMKMTAANSAFYWQSYNEEPASSDERDSITAYALWEQINVTRDSTDYLWYMTDVNIDPNEGFIKNGQSPLLTIMSAGHAMHVFINGQLSGTVYGSLEFPKLTFSKNVNLRIGNNKISLLSITVGLPNVGVHFETWNAGVLGPVTLEGLNEGTRDLSRQKWSYKIGLEGEALKLHTLSGSTSVRWVQGSLLAIRKPLTWYKAFFRTPAGNDPLALDMSSMGKGQVWINGRNIGRHWPGYIARGKCEDCYYAGTYTETKCRTNCGQPSQKWYHVPRSWLNPRGNYLVVFEEWGGDPNGISLVKRTTGSVCADIYENQPTLRNNVTRLADLWCPIGQKISQIKFASYGLPQGTCGNYREGSCHAHKSYDAPQRDCIGKQSCMVTVAPENFGGDPCPGIAKKFSVEALCS* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3408 825 Gene3D Glycosidases 17 338 - -
Tpr2g3408 825 SUPERFAMILY Galactose-binding domain-like 578 742 IPR008979 -
Tpr2g3408 825 ProSiteProfiles SUEL-type lectin domain profile. 745 825 IPR000922 GO:0030246
Tpr2g3408 825 Gene3D - 435 572 - -
Tpr2g3408 825 SUPERFAMILY (Trans)glycosidases 23 339 IPR017853 -
Tpr2g3408 825 Pfam Galactose binding lectin domain 747 824 IPR000922 GO:0030246
Tpr2g3408 825 Gene3D - 738 825 IPR043159 -
Tpr2g3408 825 SUPERFAMILY Galactose-binding domain-like 398 568 IPR008979 -
Tpr2g3408 825 Pfam Beta-sandwich domain in beta galactosidase 342 413 IPR041392 -
Tpr2g3408 825 PANTHER BETA-GALACTOSIDASE 5 722 - -
Tpr2g3408 825 Pfam Glycosyl hydrolases family 35 30 334 IPR031330 -
Tpr2g3408 825 Gene3D - 573 729 - -
Tpr2g3408 825 PRINTS Glycosyl hydrolase family 35 signature 33 50 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 PRINTS Glycosyl hydrolase family 35 signature 54 72 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 PRINTS Glycosyl hydrolase family 35 signature 109 128 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 PRINTS Glycosyl hydrolase family 35 signature 166 181 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 PRINTS Glycosyl hydrolase family 35 signature 245 260 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 PRINTS Glycosyl hydrolase family 35 signature 282 297 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 PRINTS Glycosyl hydrolase family 35 signature 302 318 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 PANTHER BETA-GALACTOSIDASE RELATED 5 722 IPR001944 GO:0004553|GO:0005975
Tpr2g3408 825 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 168 180 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3408 Tpr-Chr2 37575163 37581790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3408 6 825 Glycoside Hydrolase AT3G13750 67.707 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3408 - - gmx:106795462 1498.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3408 2 37575163 37581790 Tpr5g0733 5 12389653 12395064 PCT