LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g0335	ATGTCTTCTTCAAACCACCAGCAACAGTTCCGTTACACTCAAACTCCATCGAAGGTTCTTCACTTTCGCAATCTTCCATGGGAGTGTTCTGATGAAGAACTCGCTGATATTTGTAGTCCTTTCGGTAAAGTCATGAATACTAAGTGTAATGTTGGTGCTAATCGGAATCAAGCTTTTGTTGAATTTGCGGATCTAAATCAAGCAATTTCAATGGTTTCATATTATGCTTCATCTTCAGAGCCTGCTCAAGTTCGTGGCAAGACTGTTTACATTCAATATTCTAATAGACATGAAATTGTCAACAGCAAAGGACCTGGAGATGTCCCCGGAAATGTATTGCTGGTAACCATCGAAGGTGTTGAAGCTGGAGATGTGAGCATTGACGTTATCCACTTGGTGTTTTCTGCGTTTGGCTTTGTGCACAAGATTGCCACATTTGAAAAGACTGCAGGTTTTCAGGCTCTGATTCAGTACACTGATGCTGAGACTGCTGCTTCTGCTAGGAATGCACTCGACGGAAGAAGCATACCAAGATACTTGCTTCCAGAGAATGTTGGTTCTTGCAATTTGCGTATCTCATACTCAGCGCACCGAGACCTCAATATCAAATTCCAATCCAATCGCAGCAGGGACTACACTAATCCTATGCTTCCTGTTAATCAGACTGCTATTGACATCGCATTACAGCCTGTTGGTCCTGATGGAAAGAGGAAAGAACCTGAGAGTAATGTGCTTTTGGCATTAGTTGAAAATATGCAGTATGCTGTCACCGTAGATGTTCTTCACACGGTGTTTTCTGCATTTGGCACTGTTCAAAAAATTGCTATCTTTGAAAAGAATGGACAAACTCAGGCACTGATTCAGTACCCTGATGTTACGGTAGCAACAGCGGCCAAAGAAGCTTTGGAGGGACATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTAACATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGCAGAGACTATACAGTCCTCGATCCCAGTCTCCGTGCAACACAAGTTCCTGCGTGGCAGAATACTCAAGCTGCTCCTGTGTACCCTGGTTTACAGGGACAAATGCCATCATGGGATACAAACCAGCAGGAAGTTACACAAAATTATTTATCGGCACCCAGTAGTTTTCCACCTGGTCATGCTGTTCCTGGCTATTCCCCGGCAGCAGTGCCCCCCGCCAGTGCCTCACCTCATGCTCATATGCATCCCAACTCATTTTCTGGTACTTCTACTCCTGGAATGCAACCTTATTATGGTTAG	1299	0.438	MSSSNHQQQFRYTQTPSKVLHFRNLPWECSDEELADICSPFGKVMNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNSKGPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQYTDAETAASARNALDGRSIPRYLLPENVGSCNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQTAIDIALQPVGPDGKRKEPESNVLLALVENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTVATAAKEALEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLRATQVPAWQNTQAAPVYPGLQGQMPSWDTNQQEVTQNYLSAPSSFPPGHAVPGYSPAAVPPASASPHAHMHPNSFSGTSTPGMQPYYG*	433

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g0335	432	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	18	96	IPR000504	GO:0003723
	Tpr2g0335	432	SUPERFAMILY	RNA-binding domain, RBD	243	339	IPR035979	GO:0003676
	Tpr2g0335	432	SMART	rrm1_1	19	92	IPR000504	GO:0003723
	Tpr2g0335	432	SMART	rrm1_1	246	316	IPR000504	GO:0003723
	Tpr2g0335	432	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	109	176	-	-
	Tpr2g0335	432	PANTHER	POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2	1	424	-	-
	Tpr2g0335	432	Pfam	RRM-like domain	242	320	IPR021790	-
	Tpr2g0335	432	CDD	RRM3_PTBPH1_PTBPH2	242	338	IPR034794	-
	Tpr2g0335	432	SUPERFAMILY	RNA-binding domain, RBD	4	107	IPR035979	GO:0003676
	Tpr2g0335	432	Gene3D	-	3	104	IPR012677	-
	Tpr2g0335	432	CDD	RRM1_PTBPH1_PTBPH2	16	96	IPR034792	-
	Tpr2g0335	432	CDD	RRM2_PTBPH1_PTBPH2	110	204	IPR034793	-
	Tpr2g0335	432	MobiDBLite	consensus disorder prediction	413	432	-	-
	Tpr2g0335	432	PANTHER	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	1	424	-	-
	Tpr2g0335	432	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	23	72	IPR000504	GO:0003723
	Tpr2g0335	432	MobiDBLite	consensus disorder prediction	402	432	-	-
	Tpr2g0335	432	Gene3D	-	110	222	IPR012677	-
	Tpr2g0335	432	Gene3D	-	241	344	IPR012677	-
	Tpr2g0335	432	SUPERFAMILY	RNA-binding domain, RBD	111	210	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g0335	Tpr-Chr2	3972093	3977777	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g0335	K14948		-	gmx:100788927	666.766

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g0335	2	3972093	3977777	Tpr1g0863	1	7343896	7349334	PCT