Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0863 ATGACCGAACCTTCAAAGGTCATCCACGTTCGAAACGTGGGGCACGAAATATCTGAGAATGATTTACTTCAGCTATTTCAAGGTTTTGGAGTCATAACAAAGCTTGTCATGTTGCGTGCAAAAAATCAGGCACTTATCCAAATGCAGGATGTTCCTTCTGCAGTTAGTGCTTTACAGTATTATGCAACTACTCAGCCTAGCATAAGGGGGAGGAATGTATATGTCCAGTTTTCCTCTCATCAAGAGCTGACAACAGTAGATCAAACTCAAGGACGAGGAGACGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACGTGCTCTATCCCATAACAGTGGATGTACTGTTTCAAGTTTTTTCTCCCCATGGATCTGTGGAAAAGATCGTGACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACAACAGAGTGCTATTACTGCGAGAACTGCACTTCAGGGTCGCAATATTTATGATGGTTGCTGCCAGCTGGACATTCAATTCTCGAACCTCGATGAGTTACAAGTGAACTACAATAATGACCGTTCAAGAGATTACACAAACCCAAATCTCCCAACAGAACAGAAAGGCAGACCTCCACAACTTGGATACGGTGATGCAGGAAACATGTATGGTGTTCAGGGTTCTGGAGCCAGGGCAGTTGGATATCCACAGATGCCCAATGCTGCAGCCATTGCAGCTGCCTTTGGGAGTGGTTTGCCTCCTGGAATTACTGGGACAAATGAGAGGTGTACACTTCTTGTCTCAAATCTTAATCCTGATAGAATTGACGAGGACAAACTGTTCAACTTGTTCTCCCTTTATGGGAACATTATGAGAATTAAACTTCTACGCAATAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTGGCAGTTCACTTTCTGAAGGGAGCCATGTTGTTTGATAAGCGACTAGAGGTCAACTTCTCCAAGCATCCGAATATAACCCAAGGTGCTGACACACACGACTACAGCAACTCAAATCTCAACCGTTTCAATCGTAACGCTGCTAAAAACTACCGTTATTGCTGCTCCCCAACAAAGATGATCCATTTGTCCACACTCCCACAAGACATCACTGAGGAGGAGATTGTGACACTTCTAGAGGAGCATGGAACCATTGTCAATAGCAAAGTCTTTGAGATGAATGGTAAGAAACAAGGTCTGGTTCAGTTCGAGACCGAGGATCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCTACCTCACTTTCTGGCTCGGTAATCCGAATCTCCTATTCTCAGTTGACGAATATATGA 1332 0.4414 MTEPSKVIHVRNVGHEISENDLLQLFQGFGVITKLVMLRAKNQALIQMQDVPSAVSALQYYATTQPSIRGRNVYVQFSSHQELTTVDQTQGRGDEPNRILLVTIHHVLYPITVDVLFQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSAITARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDYTNPNLPTEQKGRPPQLGYGDAGNMYGVQGSGARAVGYPQMPNAAAIAAAFGSGLPPGITGTNERCTLLVSNLNPDRIDEDKLFNLFSLYGNIMRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFDKRLEVNFSKHPNITQGADTHDYSNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVTLLEEHGTIVNSKVFEMNGKKQGLVQFETEDQATEALVCKHATSLSGSVIRISYSQLTNI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0863 443 Gene3D - 355 440 IPR012677 -
Tpr1g0863 443 MobiDBLite consensus disorder prediction 186 205 - -
Tpr1g0863 443 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 441 - -
Tpr1g0863 443 MobiDBLite consensus disorder prediction 186 200 - -
Tpr1g0863 443 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Tpr1g0863 443 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 439 IPR006536 GO:0003723|GO:0005634|GO:0006397
Tpr1g0863 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Tpr1g0863 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Tpr1g0863 443 Pfam RRM-like domain 95 174 IPR021790 -
Tpr1g0863 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Tpr1g0863 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 434 IPR000504 GO:0003723
Tpr1g0863 443 Gene3D - 98 201 IPR012677 -
Tpr1g0863 443 CDD RRM3_PTBPH3 255 330 IPR034797 -
Tpr1g0863 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 339 - -
Tpr1g0863 443 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Tpr1g0863 443 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 441 - -
Tpr1g0863 443 Gene3D - 1 97 IPR012677 -
Tpr1g0863 443 SMART rrm1_1 367 436 IPR000504 GO:0003723
Tpr1g0863 443 SMART rrm1_1 257 326 IPR000504 GO:0003723
Tpr1g0863 443 SMART rrm1_1 101 170 IPR000504 GO:0003723
Tpr1g0863 443 SMART rrm1_1 7 76 IPR000504 GO:0003723
Tpr1g0863 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 440 IPR000504 GO:0003723
Tpr1g0863 443 CDD RRM4_PTBPH3 359 437 - -
Tpr1g0863 443 Gene3D - 253 349 IPR012677 -
Tpr1g0863 443 SUPERFAMILY RNA-binding domain, RBD 255 438 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0863 Tpr-Chr1 7343896 7349334 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0863 K14948 - gmx:100819672 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0863 1 7343896 7349334 Tpr1g0863 1 7343896 7349334 ECH
Tpr2g0335 2 3972093 3977777 Tpr1g0863 1 7343896 7349334 PCT