Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4492 ATGCTTACCGTGGTGCGTGTGCACCTTCCTTCTGATATTCCCATTGTTGGTTGTGAACTTACTCCTTATGTTCTTCTTCGCCGTCTTGATACAACCGTTACTACCGATGATGTTCTTGAAACTTTTCCTTTAGACGGCCATTTCTTGCGCTACAAGTGGTATCGTGTACATAGTGATAAAAATGTTGCTGTATGTAGCATACATCCATCTGAAACGGCCACAATACAGTGTGTAAGTTGTATTAAGGCCAGAGTACCCGTTCCTAAAAGTTACCACTGCACCTCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGCCTTGCACGATCGTGCTGCAAATGCGGTTAATGAAAATGGAAATGAGGAGGATGAGGCATTTGGGCGCTTTAATAGTTCTGTATCTTCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTATGCAGCTCCTATGTATCCAGCATCTATAAAAAATGGCAGTGAAACTTGGTTCGAAGTTGGACGATCTAAGACTTATACCCCGTCTGGTGATGACATTGGTCATGTCCTTAAGTTTGAATGTTCTGTTGTTGACGCAGTGACAAAGTTACCCGTGGGACAAGTTAACACTTTACTAACTAATCGGGTCATAACTGCTCCTTCACCTGTTCCGCGCCGAGTAATACGTGTTGATGGGATGGGGCATTTAGATCTAGATAGGCGTATGACATCTTTGGGAACTTTTACTGTTATGTCATACAATATTTTGTCCGAGACATGTGCCTCAAATGATCTGTATAATTACTGTCCTCCATGGGCACTTTCTTGGCAATATCGCAGGCAAAATTTGTTACGGGAAATTGTTGGTTACTGTGCAGACATTATTTGCCTTCAAGAGGTTCAAAATGACCATTATGAGGAATTTTTTGCTCCTGAATTGGACAAACATGGCTATAATGGTCTTTTCAAGAGAAAAACAACTGAGGTATCCAGTGGCAACACAATTGATGGTTGTGCGACATTTTTCCGCAGAGACAGATTTTCCCATGTGAAGAAATATGAGGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCCATGATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGACTGGTCAAGGATAATGTTGCACTAATAGTGGTTCTAGAAACAAAAGTTAACAACCAACCAGTTGATAATCTCGGGAAAAGGCAACTTCTTTGTGTGGCAAATACACATGTGCATGTCCAGCAAGATTTAAAAGATGTCAAACTGTGGCAGGTGCATACTCTCTTAAAAGGGTTGGAAAAAATAGCTACAAGTGCAGACATTCCAATGTTGGTTTGTGGAGATTTTAATTCTGTTCCAGGAAGTGCTCCTCATTCACTTCTTGCAATGGGGAAGGTAGACCCATCACATCCTGATTTAACTGTTGACCCACTTAATATTTTACGTCCTCATAGCAAGTTGGTTCATCATTTGCCACTGGTCAGTGCATACTCGTCTTTTGCAAGAACAGTAGGTCTTCCATTTGAGCAGCATAAAAGGAGACTGGATGGCGGAACAAATGAACCTTTATTCACAAGCGTCACTAGAGATTTTGTTGGCACTCTAGACTACATATTTTACACAGCGGATTCATTGGTTGTGGATTCATTATTGGAGTTATTGGATGAGGAAAGTTTGAGGAAGGACACTGCACTTCCTTCACCTGGATGGTCCTCAGATCATATAGCTCTCTTAGCTGGGTTTCGCTGCTGCAAGAGTAAGTCTAGGCATTGA 1770 0.4181 MLTVVRVHLPSDIPIVGCELTPYVLLRRLDTTVTTDDVLETFPLDGHFLRYKWYRVHSDKNVAVCSIHPSETATIQCVSCIKARVPVPKSYHCTSKCFSDAWQHHRALHDRAANAVNENGNEEDEAFGRFNSSVSSSASSASLTNGYAAPMYPASIKNGSETWFEVGRSKTYTPSGDDIGHVLKFECSVVDAVTKLPVGQVNTLLTNRVITAPSPVPRRVIRVDGMGHLDLDRRMTSLGTFTVMSYNILSETCASNDLYNYCPPWALSWQYRRQNLLREIVGYCADIICLQEVQNDHYEEFFAPELDKHGYNGLFKRKTTEVSSGNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMIPTTQKKTALNRLVKDNVALIVVLETKVNNQPVDNLGKRQLLCVANTHVHVQQDLKDVKLWQVHTLLKGLEKIATSADIPMLVCGDFNSVPGSAPHSLLAMGKVDPSHPDLTVDPLNILRPHSKLVHHLPLVSAYSSFARTVGLPFEQHKRRLDGGTNEPLFTSVTRDFVGTLDYIFYTADSLVVDSLLELLDEESLRKDTALPSPGWSSDHIALLAGFRCCKSKSRH* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4492 589 CDD Deadenylase_CCR4 243 582 - -
Tpr1g4492 589 PANTHER CARBON CATABOLITE REPRESSOR-LIKE PROTEIN 36 586 - -
Tpr1g4492 589 SUPERFAMILY DNase I-like 239 583 IPR036691 -
Tpr1g4492 589 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 36 586 - -
Tpr1g4492 589 Gene3D Endonuclease/exonuclease/phosphatase 207 588 IPR036691 -
Tpr1g4492 589 Pfam Endonuclease/Exonuclease/phosphatase family 244 573 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4492 Tpr-Chr1 52935837 52942199 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4492 K12603 - gmx:100819402 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0594 6 4862254 4868202 Tpr1g4492 1 52935837 52942199 PCT