Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4461 ATGGGCACTAGTTCTGAATATTTTGAGAAATTCACATGGAGAATTGAAGATTTCTCTAAAAAGAATGGCATGAAATTAAAATCTAAAGATTTCAAAATCCGGGGTTATACATGGAGGATCCTTGTTCATCCACTGAGGAAGGATGTTGACCATTTTACATTTTATTTGATGGTGGCTGATTCTTTACCACCTTATGGATGGAATAGAAACACATTTTTCAAGTTGGTTCTAATTAATCAACTGGATAAGAAAAAGTCCATCATAAAAGAGACTCAACAAAAGTTCAATGGAGGATATAGGTGTTGGGGTTCATTTTTCCTAAATCTTAAAGACTTCAATGACCATAGGAAAGGGTATCTTGTGAAAGACACATGCATAATTGAAGTTCATATTTGTGTCTCCAATTTTGCACCCAAAATTCATGACATCAATTCCTTGAACCAAAATTCAACTCCAACAATAGATCAATCCTCAGATGAGAGGGAAATACTTAGTGCAATAACATCAAGTTCTACTTCTAGTCCAAATGAAGAAGGCGAAATTAAAAGTTCGGATTTAACACTAAGAGAATTTCTAGATTTCGATAGCTTAAAACCCGAAGAAAAATATCTTATTCCACTCTTAGACGAAGTTTGCACTTGGCGTCCGTCTTTGATACAAAGTCAAATGAATAAAACTCGTTTGTTTCGACAATGGGCGTTTACGTCATTAGGTCAAGTTTTGCATTTTCTTAAGACGAAAAATGTGAAAGAAATGAGTGAAGACGATATCAAGAATCTAAGAAGTGTGTGGGAAGAACTTGCGAAATCTTCGGAATTTGATTTGAGTTGGTTAGAGCCTTATGTTCAATCTGCTTTAGGTGTGAAACCTCATTTGGAAAGAGCAAAGAAATTGAAGAAATTAAAGGATAAAGTTGTTGCTTTGGATATTAAAATGAAAATGCTTAGGGATGAATTAACAGCTTCACAAGCACAATATGAGGTTGCAAGGAGAAGCTTATCAGAAGTAAGAAATGGTTTCAAAGAAATGAATATTAATGCTCCTATAGGTTATGCTATGTTTTAA 1065 0.3408 MGTSSEYFEKFTWRIEDFSKKNGMKLKSKDFKIRGYTWRILVHPLRKDVDHFTFYLMVADSLPPYGWNRNTFFKLVLINQLDKKKSIIKETQQKFNGGYRCWGSFFLNLKDFNDHRKGYLVKDTCIIEVHICVSNFAPKIHDINSLNQNSTPTIDQSSDEREILSAITSSSTSSPNEEGEIKSSDLTLREFLDFDSLKPEEKYLIPLLDEVCTWRPSLIQSQMNKTRLFRQWAFTSLGQVLHFLKTKNVKEMSEDDIKNLRSVWEELAKSSEFDLSWLEPYVQSALGVKPHLERAKKLKKLKDKVVALDIKMKMLRDELTASQAQYEVARRSLSEVRNGFKEMNINAPIGYAMF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4461 354 SUPERFAMILY TRAF domain-like 10 135 - -
Tpr1g4461 354 CDD MATH 10 131 IPR002083 GO:0005515
Tpr1g4461 354 ProSiteProfiles MATH/TRAF domain profile. 8 131 IPR002083 GO:0005515
Tpr1g4461 354 Coils Coil 298 332 - -
Tpr1g4461 354 Pfam MATH domain 15 131 IPR002083 GO:0005515
Tpr1g4461 354 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 7 142 IPR008974 GO:0005515
Tpr1g4461 354 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 8 336 - -
Tpr1g4461 354 SMART math_3 10 112 IPR002083 GO:0005515
Tpr1g4461 354 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 8 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4461 Tpr-Chr1 52503996 52506214 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4461 - - gmx:100797919 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4461 1 52503996 52506214 Tpr6g0608 6 4984768 4986949 PCT