Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4454 ATGGATTCGGAAACAGTTACATCTCCCAAGGATTTGTTGAAATGTTGCGACTGCGGATGTAGTTGCTCTTTGTTGGATCAAAATTCTGCAACTTGGATGCGTTCTGTTAAACGGAAGCATGATGAGTTTAAAGTGGAAAGCCAATTACCGATGCAATCGGTTGCGCGGGTTGAAATTGGGAATGAATGTGTAGCATTACGTGAGATGGTTGGTGTGCAACAGAGAACTATTCAAGATCTGAATGAAGAATTGGATGAGGAGAGAAATTCTTCTTCCACCGCTGCGAACGAGGCGATGTCTATGATCTTGAGGTTGCAGAGGGAAAAGGCAGAGATTCAAATGGAAGCTCGTCAATTCAAGCGTTTTGCGGAGGAGAAAATGATGCATGATCAAGAGGAACTTATGTCTTTGGAAGATTTGTTGTACAAGAGAGAACAGATAATTCAGTCGCTTACGTGCGAAGTTCAGGCTTACAAGCATAGAATGATGAGTTTTGGGTTCACTGAGGATGAGTTGGAGGGTGATCAATATGACATTCTTCCCTACGAATACCCTCCTTTAAAATGTAATGTCATTCATAATGCCATGGATGCTGATAACGACGATACTGATATTGAGAAATATGTATTTGGCGAAACTCCTAATGACCGTTTGAGGAACTTGGAGAATAGGATTTCTCAAATGGAGAAAAGTCCCACTTACAGCCAAAAAGATGGAGATTTAATAGGAAAAAATGTTCTAGAGAAAGTAATTGTTGGACAATCTCCAAAGTTGACGAGGCTCTCGAAGAAAGTTTCCTCTGACTCATCAGCTTTCGGTGGGATGGTTAGAGAAATCGGTTCTGAGTTCCCTGTGGAGTCTCCGATGAACAATAGCAACTATAAGAAGGATTATTTCTCTCAGTCAGAAGACCATTCTAATTTGAAGAAGGTAGATAATGCTTCGGAAGGTGATGATACGAGTGACAGAGTTTATACAATTGACTCTGTTCATTCTGGGGCACCATATAATGGCTTTACAGGTTCGAAAGCTGGAGCCTTCGAAGATTATGCAACCAGTCCAAAGGAATCAGGGAATCATCATGCTGAATTTGAGGATCCCTACATAAAGAAGCTTTACACGAGGCTTCAGGCACTTGAAGCTGATAGGGAATCAATGAGGCAGGCAATCATCGCAATGAGCACAGATAAAGCACAGGTTGTGTTATTGAAGGAGATAGCTCAGCATTTGTGCAAAGAGATGTCACCGCAAAGAAAAATGAGTACCAGCAAGCCATATGTTGCTACAAGAACTCCATTCTTGTCAATTTTTAAGTGGGTCACATCAGTTGTTCTTTGGAGAAAGAAAGCGCAAGAAAGCAAGTATATGTTAGGGCTACCAACTGACAGTATGGGCTTGCTGTTGCTCCTGGACAAAAGAACAAATGCAAGGCCATGGAGATGTATTTCAAGTACACAAGTGGGAGATTAA 1470 0.415 MDSETVTSPKDLLKCCDCGCSCSLLDQNSATWMRSVKRKHDEFKVESQLPMQSVARVEIGNECVALREMVGVQQRTIQDLNEELDEERNSSSTAANEAMSMILRLQREKAEIQMEARQFKRFAEEKMMHDQEELMSLEDLLYKREQIIQSLTCEVQAYKHRMMSFGFTEDELEGDQYDILPYEYPPLKCNVIHNAMDADNDDTDIEKYVFGETPNDRLRNLENRISQMEKSPTYSQKDGDLIGKNVLEKVIVGQSPKLTRLSKKVSSDSSAFGGMVREIGSEFPVESPMNNSNYKKDYFSQSEDHSNLKKVDNASEGDDTSDRVYTIDSVHSGAPYNGFTGSKAGAFEDYATSPKESGNHHAEFEDPYIKKLYTRLQALEADRESMRQAIIAMSTDKAQVVLLKEIAQHLCKEMSPQRKMSTSKPYVATRTPFLSIFKWVTSVVLWRKKAQESKYMLGLPTDSMGLLLLLDKRTNARPWRCISSTQVGD* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4454 489 MobiDBLite consensus disorder prediction 283 321 - -
Tpr1g4454 489 ProSiteProfiles GTD-binding domain profile. 61 159 IPR007656 -
Tpr1g4454 489 Coils Coil 70 140 - -
Tpr1g4454 489 Pfam Zein-binding 65 155 IPR007656 -
Tpr1g4454 489 Coils Coil 369 389 - -
Tpr1g4454 489 MobiDBLite consensus disorder prediction 298 321 - -
Tpr1g4454 489 PANTHER ZEIN-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 10 464 - -
Tpr1g4454 489 PANTHER BNAANNG28530D PROTEIN 10 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4454 Tpr-Chr1 52356635 52360854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4454 - - gmx:100814833 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4454 1 52356635 52360854 Tpr1g4454 1 52356635 52360854 ECH
Tpr6g0636 6 5198938 5202200 Tpr1g4454 1 52356635 52360854 PCT