Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4440 ATGGAATCTGAAAATGGTGTTGTTATGGAAGATGAGAAACATGTTATTGGAGAAACAACTAAGGAGAGTTTACAGAAAGAAATTGAAGAGAATTTAAATGCAGAAATTCAACCCAAGAATGAAGTATCTCAATCCATAGTTGAAATTGATGGCAACAATTCTGCAGTTAGTAAAATCTCCAAACATGCCAAGGAACATGGTTCCAAAAGTGGCGTTGCATCAAAGAACACTAAATCTGCTACCAAAGATAAATCAAATTTGAAGGCAACAACTTCATCATCTCAAACACAAAGACAACAAAACCTTTCCAAGAGCCTTACTTTCCCATCGAAAATAGCTCGTGTCGATGCTATGAAGAAAAGCACTGATGGAATTCTTCTGAAGAAAGAAAATAAGAATGTTCAAGCTGTGTCTTCAACTATTCATTCAAGAAAGTTGACAAACTCAAAAGTGAACTCAAAGGAGGCAAAAACAAACCATGGAAATTCTAAACAAATTACTTCTTTAAAATCCAATAATAGCTTTAAAAATTCTGAGCTTGGAAGGGCTTCCAATGTGAATGCAGTTGCTAAGAGCCATACATCCGAGGCATCGTTACCTATTGATCAGAATTCAAACCCTGCAAAAAGTGAAAAGCCGAATAAAGAAGACGATGATGTTCATTCTACAACCTCAAGTCTTACTCCTCGTAGGAAAAGCAATGGTTTTGGATTTTCGTTTAGATTGGAAGAACGAGCTGAAAAAAGAAAAGAGTTCTTCTCAAAGTTAGAAGAGAAAATTCAGGAAAAGGAAGCTGAGAAAAGCAATCTACAAGAGAAATCGAAGGAAAGCCAGGAGGCAGAGATCAAGAAATTAAGAAAGAAGATGACATTCAAAGCAGCTCCAATGCCAAGTTTCTATAAGGAACCTCCTCCAAAAGTTGAACTGAAAAAGATACCTACAACACGCCCAAAATCACCAAAGCTCGGAAGAAACAAGGGATCTGTTGTGAACAACAACAACAACAACAACTCCGAAGATAAGTCTAGTTCTATCCTACATGAAAAGCAACAGCAGAATGATTCAACCAAGGCAAAGACAAAGGGTTATAAAGATGTAAGTTCAAAGAAACCAATAAAAAAAACTCAAGCTAAGATACAATCTCAGGAAATTGCAGTCACAAAAACAGAATTGGATTCTGCAAGGTCTACTGCAAATGAAGGCTCAATAATAATCAACCAAGATGCAAATGCAGATATAAGAGAAAGCATTGAAGAATGTAAAGATCCACCTGTTGACATTTCTGAATATCAAAATGGGGTGGAACTAGAATCACAAAATGATCTTGATCATAACAGTGAACTGGTTTTAATTGAATCCACACCAGAAATACCAGAAATTGTATCCTATGAAGTTACTGTTGGAGTGTAG 1410 0.361 MESENGVVMEDEKHVIGETTKESLQKEIEENLNAEIQPKNEVSQSIVEIDGNNSAVSKISKHAKEHGSKSGVASKNTKSATKDKSNLKATTSSSQTQRQQNLSKSLTFPSKIARVDAMKKSTDGILLKKENKNVQAVSSTIHSRKLTNSKVNSKEAKTNHGNSKQITSLKSNNSFKNSELGRASNVNAVAKSHTSEASLPIDQNSNPAKSEKPNKEDDDVHSTTSSLTPRRKSNGFGFSFRLEERAEKRKEFFSKLEEKIQEKEAEKSNLQEKSKESQEAEIKKLRKKMTFKAAPMPSFYKEPPPKVELKKIPTTRPKSPKLGRNKGSVVNNNNNNNSEDKSSSILHEKQQQNDSTKAKTKGYKDVSSKKPIKKTQAKIQSQEIAVTKTELDSARSTANEGSIIINQDANADIRESIEECKDPPVDISEYQNGVELESQNDLDHNSELVLIESTPEIPEIVSYEVTVGV* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4440 469 Pfam Targeting protein for Xklp2 (TPX2) domain 238 307 IPR027329 -
Tpr1g4440 469 MobiDBLite consensus disorder prediction 209 225 - -
Tpr1g4440 469 MobiDBLite consensus disorder prediction 325 341 - -
Tpr1g4440 469 MobiDBLite consensus disorder prediction 72 108 - -
Tpr1g4440 469 MobiDBLite consensus disorder prediction 57 234 - -
Tpr1g4440 469 MobiDBLite consensus disorder prediction 261 382 - -
Tpr1g4440 469 Coils Coil 246 288 - -
Tpr1g4440 469 MobiDBLite consensus disorder prediction 342 372 - -
Tpr1g4440 469 MobiDBLite consensus disorder prediction 132 208 - -
Tpr1g4440 469 PANTHER PROTEIN WVD2-LIKE 4 1 469 IPR044833 GO:0008017
Tpr1g4440 469 MobiDBLite consensus disorder prediction 261 288 - -
Tpr1g4440 469 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g4440 469 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) FAMILY PROTEIN 1 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4440 Tpr-Chr1 52124440 52128968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4440 - - gmx:100798810 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0649 6 5270958 5274529 Tpr1g4440 1 52124440 52128968 PCT