Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4252 ATGCGGCGGTTTCACACTCCAACGCTGCTGTTGCTGCTTCTGCTTTTGATAGGATGCTGCATAGCCACCTCGCCGGTCTTCGGCGGTGGCGGCGGTTACCTCCATCTACAACGAGCAGTTCCTCTTAGCCACCGTGTTGAGATGGAAACAATCAGAGCTCGTGATAGAGTTCGCCATGCTCGATTCTTGCAAGGTGTTGTTGGTGGTGTTGTCCGCTTCCAAGTTCAAGGCACCTCCGATCCATTCTCACTGGGGCTGTATACTACCAAAGTAAAGATAGGATCTCCACCTAAGGAATTTAATGTTCAGATTGATACTGGAAGTGATATTTTGTGGGTTAATTGCAATACTTGCAGTAATTGTCCTCAAACTAGTGGACTTGGGATTGAGCTCAATTTCTTTGACACAGTTGGTTCATCCACTGCTGCGCTAGTTCCTTGCTCGCACCCTATATGCACTTATGGGGGTCAAGGTCCAGGTGCTCAATGCTCCCCTCAGGTTAATCAGTGCAGCTACACGTTTCAGTATGAAGATGGGAGTGGTACCTCAGGTACTTATGTCTCTGATGAACTGTATTTTGACATGATTCTCGGACAGTCTGCTCCTGATGGTGTCAACTCTTCGGCTACCGTTATTTTTGGGTGTAGCACCTCTCAGTCTGGAGATTTGACTAAGACGGATAGAGCGGTTGATGGAATTTTTGGGTTCGGCCCTGGTGCTCTATCTGTTGTATCACAATTGTCATCACGAGGAATAACACCCAAAGTTTTCTCTCATTGTTTGAAAGGAGATGCCAATGGAGGAGGCATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTAGTCCCATCACAACCTCATTACAACTTAAATCTTGAAAGCATTGCTGTCAATGGGCAACTTCTCTCAATTAATCCAGCTGTATTTGCAACATCTGACAACCGAGGAACTATAATTGACTGTGGTACAACATTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTTAATGCAGTTAATACTGCTGTGTCACAAATTGCTACTCCCTTTATTTCAAAAGGAAGCCAGTGTTATCTGGTCATAACCAGTATAGATGATAATTTTCCTCCAGTCAGTTTAAACTTTGCGGGTGGAGCATCAATGGATTTAAAACCAGCACAATACCTTGTGCATAACGGTTTCCAGGACGGTGCTGCAATGTGGTGCATAGGTTTCCAGAAAGTGCAAGAGGGAGTCACAATTTTAGGAGATCTTGTTCTAAAAGATAAGATCATTGTCTATGACTTGGCTCGTCAGCGAATTGGATGGACTAACTATGATTGTTCCATGTCTGTAAACGTCTCGGTGACTACAAGCAAGGATGAGTACATCAATGCAAGAGCAAAACAGACTAGTGTCAGCAGCTCAAAGATAGGGATTCTCTCCAAGTTACTCCCTGTAAGCATTGTGGCTCTTTCTATGCACATAATAATCTTCATGAAGTCACCACATTTATAA 1515 0.4383 MRRFHTPTLLLLLLLLIGCCIATSPVFGGGGGYLHLQRAVPLSHRVEMETIRARDRVRHARFLQGVVGGVVRFQVQGTSDPFSLGLYTTKVKIGSPPKEFNVQIDTGSDILWVNCNTCSNCPQTSGLGIELNFFDTVGSSTAALVPCSHPICTYGGQGPGAQCSPQVNQCSYTFQYEDGSGTSGTYVSDELYFDMILGQSAPDGVNSSATVIFGCSTSQSGDLTKTDRAVDGIFGFGPGALSVVSQLSSRGITPKVFSHCLKGDANGGGILVLGEILEPSIVYSPLVPSQPHYNLNLESIAVNGQLLSINPAVFATSDNRGTIIDCGTTLAYLVQEAYDPLVNAVNTAVSQIATPFISKGSQCYLVITSIDDNFPPVSLNFAGGASMDLKPAQYLVHNGFQDGAAMWCIGFQKVQEGVTILGDLVLKDKIIVYDLARQRIGWTNYDCSMSVNVSVTTSKDEYINARAKQTSVSSSKIGILSKLLPVSIVALSMHIIIFMKSPHL* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4252 504 PANTHER ASPARTYL PROTEASES 11 466 IPR001461 GO:0004190|GO:0006508
Tpr1g4252 504 PRINTS Pepsin (A1) aspartic protease family signature 93 113 IPR001461 GO:0004190|GO:0006508
Tpr1g4252 504 PRINTS Pepsin (A1) aspartic protease family signature 322 333 IPR001461 GO:0004190|GO:0006508
Tpr1g4252 504 PRINTS Pepsin (A1) aspartic protease family signature 419 434 IPR001461 GO:0004190|GO:0006508
Tpr1g4252 504 Gene3D Acid Proteases 276 454 IPR021109 -
Tpr1g4252 504 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 11 466 - -
Tpr1g4252 504 Pfam Xylanase inhibitor N-terminal 87 274 IPR032861 -
Tpr1g4252 504 Gene3D Acid Proteases 71 275 IPR021109 -
Tpr1g4252 504 CDD pepsin_A_like_plant 87 447 IPR034161 -
Tpr1g4252 504 ProSiteProfiles Peptidase family A1 domain profile. 87 443 IPR033121 -
Tpr1g4252 504 SUPERFAMILY Acid proteases 82 451 IPR021109 -
Tpr1g4252 504 Pfam Xylanase inhibitor C-terminal 292 443 IPR032799 -
Tpr1g4252 504 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4252 Tpr-Chr1 49467030 49472218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4252 82 448 Miscellaneous Gene Families AT1G44130 27.487 2.75e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4252 - - gmx:100820394 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4252 1 49467030 49472218 Tpr1g4252 1 49467030 49472218 ECH
Tpr6g0831 6 7157598 7162639 Tpr1g4252 1 49467030 49472218 PCT