Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4152 ATGAAACACCACAAAACACTCTCAAAGTTCCTCCCAAATCTAATAATCCTAGTAACTTTCCTACTCCTTTCAACAACACGGACCATAGCACAAGAAGTTGAGGATGAGAGTGAATTTGATTACATAAAAGGGAGTGAAAAGGGTCCTGCACATTGGGGTGAATTAAAGAAGGAATGGGCAACATGTAAAAATGGGAGATTGCAATCTCCAATTGATTTGTCAAGTCACAGAGTGAAGGTAGTGCCAAAGTTAGGAGAATTAAAGAAATACTATAAGCCTCAGAATGCCACTATCAAGAACAGAGGTCATGATATTCAGGTTAAATGGGAGGGAGATGCAGGATCAATAAATATCAATGGCACACAATTTTTTCTACATCAAGCCCACTGGCACTCACCTTCTGAACACACCATCAATGGCAGGAGGTATGACCTGGAGGTACATTTGGTTCATGAAAGTGCAAAAATAAACGGTAAGAGCAAGATAGCTGTTATTGGACTTTTCTATAAGATTGGTCGACCAGATCGTGTTCTCACCAAGTTGTCAAAATACATAAAAAGCATGGTGGATACTGAAGCAGATAGGAGCATTGGGGTATTTGATCCCTCAGAAATCAAGCTGGGTGGGAAGAAGTATTATAGATACATGGGTTCCCTCACTGTCCCTCCTTGCACTGAAGGTGTCTTTTGGACTATTAATAAGAAGATAAGAAGTGTGTCTAGAGCACAAGTGGAGCTATTAAGGGAGGCTGTCCATGATCATGCAGAGAAGAATGCCAGACCTATACAACTCCTGAATAGAAGAAAGATACAACTCTATCGCCCAAAATGGAAGAAATGA 840 0.4048 MKHHKTLSKFLPNLIILVTFLLLSTTRTIAQEVEDESEFDYIKGSEKGPAHWGELKKEWATCKNGRLQSPIDLSSHRVKVVPKLGELKKYYKPQNATIKNRGHDIQVKWEGDAGSININGTQFFLHQAHWHSPSEHTINGRRYDLEVHLVHESAKINGKSKIAVIGLFYKIGRPDRVLTKLSKYIKSMVDTEADRSIGVFDPSEIKLGGKKYYRYMGSLTVPPCTEGVFWTINKKIRSVSRAQVELLREAVHDHAEKNARPIQLLNRRKIQLYRPKWKK* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4152 279 SMART Carb_anhydrase_2a 41 274 IPR001148 -
Tpr1g4152 279 Pfam Eukaryotic-type carbonic anhydrase 48 271 IPR001148 -
Tpr1g4152 279 Gene3D Alpha carbonic anhydrase 35 278 IPR036398 -
Tpr1g4152 279 ProSiteProfiles Alpha-carbonic anhydrases profile. 37 274 IPR001148 -
Tpr1g4152 279 PANTHER CARBONIC ANHYDRASE 14 276 IPR023561 GO:0004089|GO:0008270
Tpr1g4152 279 CDD alpha_CA_prokaryotic_like 48 272 IPR041891 -
Tpr1g4152 279 ProSitePatterns Alpha-carbonic anhydrases signature. 134 150 IPR018338 GO:0004089|GO:0008270
Tpr1g4152 279 SUPERFAMILY Carbonic anhydrase 38 270 IPR036398 -
Tpr1g4152 279 PANTHER ALPHA CARBONIC ANHYDRASE 3 14 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4152 Tpr-Chr1 47975263 47981153 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4152 K01674 - gmx:100797935 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4152 1 47975263 47981153 Tpr1g4152 1 47975263 47981153 ECH
Tpr1g4152 1 47975263 47981153 Tpr6g0862 6 7421095 7423653 PCT