Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4074 ATGGAGGAAGCACTGGAACTGGCACGTGCCAAGGACGCAAAGGAACGAATGGCTGGTGTAGAGCGTCTCCATCAAGTTCTAGAAGCTTCTAGAAAGAGTCTAAGTTCAACTGAAGTTACTTCTCTCGTCGATTGTTGCTTGGATCTCTTGAAGGATAGTAGTTTTAGGGTCGCACAAGGCGCTCTTCAAGCTCTGGCTTCTGCCTCTGTTCTCTCCGGCGATCATTTCAAACTTCACTTCAACGCGCTTGTTCCTGCTGTCGTTGATCGGTTAGGTGATGCTAAACAGCCTGTTCGTGATGCTGCTAGAAGGCTCTTGCTCACTCTCATGGAGGTTTCATCTCCTACAATAATTGTTGAAAGAGCTGGGTCTTTTGCTTGGACATGCAAAAACTGGAGAGTCAGAGAGGAGTTTGCGCGAACTGTGACATCTGCAATTGGTCTATTTTCATCTACTGAACTGCCCCTTCAACGGGCTATTCTTCCTCCAACTTTGCAATTGTTGAGTGATCCAAATCCTGCTGTCAAGGAAGCAGCTATTTTGTGCATTGAGGAAATGTTTGCGCAAGCTGGGTCTCAATTTCGCGATGAACTTCAGCGCCACAATCTCACTTCTTCTTTGGTGAAATATATTAATGCTAGGCTAGAGGGGATTCAACCAAAAGTTCAGTCTTCAAATGGTATTTCTAGTGGTTATAATATCCCTGGAGAAATTAATTCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCATCAAAGGAGACATCTCGTTTTGGAGGAGAAGGTGATGTCACTGAGAAAGGCATAGAACCTATCAAGGTGTATTCGGAGAAGGAATTTATCAGGGAAATCGAGAAGATTTCATCTACCCTTGTACCAGAAAAGGACTGGTCAGTACGAATTGCTGCCCTGCAGAGAATCGAAGGTCTTGTTTTGGGAGGAGCTGCTGATTATCCATGTTTTTTTGGAATCCTAAAACAGCTTATTGGACCTTTAAGCACACAACTGTCAGATCGTAGGTCTACCATTGTGAAGCAGGCATGCCATCTATTATGCTTTTTGTCGAAAGACCTCTTGGGTGATTTTGAAGCATGTGCTGAAATGTTCATACCAGTCCTTTTGAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGCTACGCAACTGCAAAGTTGCTCGTGTGCTTCCTCGAATAGTTGATTGTGCAAAAAATGATCGCAGTGCAATACTTCGTGCAAGGTGCTGTGATTATGCTCTTTTAATACTAGAACATTGGCCTGATGCACCAGAAATACAGCGGTCAGCAGATTTATACGAGGATATGATAAGGTGTTGTGTTTCAGACGCAATGAGCGAGGTGCGGTCGACTGCAAGGATGTGCTATAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCCCGTCGCCTATTTTCATCCTTTGACCCTTCTATTCAAAGGTTAATAAATGAAGAGGATGGAGGCAAACATAGGCGACATGCATCGCCTTCCATTCGTGATAGAAGTGCACCGATGTCATCAACTCCTAATCTAACTGGTTATGGAACTTCAGCTATTATTGCAATGGACAGAAGTTCTAGTTTATCATCAGGGACATCTATGTCCTCTGGTGTTCTTCTTTCACAAGCTAAGCCACTTGGTAAAGGTACAGAACGTAGTTTAGAAAGTGTACTGCATGCAAGCAAACAGAAGGTCAGTGCTATTGAGAGCATGCTTAGAGGTTTGGATTTGTCAAATAAGCATAATTCATCTGCTCTGCGATCTTCAAGTTTGGATCTAGGAGTTGACCCTCCCTCATCTCGAGATCCCCCATTCCCTGCTGCTGTTTCAGCCTCAAATCATCTGACTACCCCTTCAACAACAGAATCATCTGGTTTGGGTGTCAATAGAGGTAGTAGCCGGAACGGTGGTTTGGGTTTATCTGATATAATCACCCAAATTCAAGCTTCCAAAGATTCTAGCAAGTTATCATATATTAGCAATGTTGGTATTGAGCCTTCATCAGATTTGTTATCATACACAAGTAAACGGGCTACTGAAAAGTTACAAGGAAGTTCTGTTGATGAAAATAGTTACACCCGGGAGACTAGGCGATATATGAACCCCAATGTGGATAGGCAGTATATGGATGCCTCTTATAGAGATGGGAACTATAGGGATTCACAGAATGGTTATGTCCCCAATTTTCAGAGGCCACTATTGAGAAAGAACGTAACTGCACGTGTGTCAGCTGGCAGGAGAAGGAGTCTTGATGATAGTCAATTATCTGTTGGAGAGATGTCAAATTATGCAGATGGACCGGCATCTCTTCATGAAGCTCTTACTGAAGGACTTAGCTCAGGTTCTGACTGGTCTGCCAGGGTTTCTGCCTTTAATTACCTTCACTTGTTATTGGAGCAAGGTCAAAAGGGTATTCAAGAAGTTGTCCAGAATTTTGAGAAGGTAATGAAGTTATTTTTTCAGCACTTGGATGACCCCCATCATAAAGTCGCACAGGCGGCTCTCTCCACACTTGCAGATATTATTCGTACATGCCGAAAGCCCTTTGAGGGTTACATGGAACGAATGTTACCCCATGTTTTTTCTCGTTTAATTGACCCCAAAGAGCTTGTTAGGCAAGCATGCTCTATGACTTTGGAGGCTAATGCTAAAACATACAGTATAGATTCCCTCTTGCCCGCATTGCTACGCTCTCTCGATGAACAAAGGTCTCCAAAGGCTAAATATGCTGTTATTGAGTTTGCAATCGGTTCCTTTAACAAGCATGCAATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTAAAACTATGGCTTGCCAAGTTAGCCCCATTAGTTCACGATAAAAACACAAAACTTAAAGAAGCAGCTATTACATGCATTATATCAGTATACTCTCACTTTGATTCATCTGCAGTTTTGAATTTTATTCTTAGTTTGTCAGTTGATGACCAAAATTCTTTGAGACGAGCCCTTAAACAACGCACCCCTCGCATTGAAGTAGACTTAATGAACTATCTGCAGAACAAGAAAGAGCGGCGTAATAAGTCTTCATATGATCCATCTGATAATGTAGGAACATCCTCTGAAGAGGGATATGCTGGTTTGTCTAGGAAAGCTCATTACATTGGGAGGTATTCTGGCGGTTCTCTCGATAGTGATGGTGGCAGGAAATGGAATTCCCAAGATTCAAACCTGGTTAAAGCCAGTCTTGGCCAATCAGCTTCTGATGAAACTGAGGAACATCTGTATCAGACTGATTGTGATAGTGGTATTGTTAGTTCAAAAGCCAAAGATCATTCTTACACAGTCAATTCAATGGATCAAAACTTTGGCTTTCAAACTGGCCAACTTGGATATGTGGATAGTAGCATGAACTTCGAAGGTCTATCATCTGATGTGGATGCTAATGGTCTCCTGTCATTAGAACATTTAAACATTGCCGAAGGCTTTGAACATCTCTCTGAATTGAACCATAATCATCACTCAGCTGAAGATGTGACGGTCAACCACCTGACAAACACAGGACTCGGCATTCCTCAAATTCTTCATATGATATGCAGTGGGGGTGATGGAAACACTATTTCAAGCAAGCGGACTGCACTTCTACAGTTAGTTGAAGCTTCTGTAGCAAATGATCATTCTGTTTGGATCCAGTATTTCAATCAGATTTTGACTGTTGTGCTTGAGGTTCTGGATGATTCAGATTCCTCAACCAGAGAGCTTGCTCTTTCATTGATACTTGAAATGCTTAAAAACCAGAAAGATGCCATGGAAAATTCTGTTGAGGTTGTAATTGAAAAGCTGCTTAACGTTACAAAGGATATTGTTCCCAAGGTCTCAAATGAAGCGGAGCACTGCCTGACAATTGTTTTATCTCAGAATGATCCATTCAGATGTTTAAGTGTTATTATCCCTCTACTGGTTACCGAGGACGAGAAAACTTTAGTCACTTGCATAAATTGCTTGACCAAGATTGTGGGGCGGCTCTCTCAGGAAGAACTGATGGCTCAGTTACCCTCATTTCTGCCTGCATTGTTTGAAGCTTTTGGAAACCAGAGTGCGGATATCCGTAAGACTGTTGTTTTCTGTCTAGTGGATATTTATATCATGCTTGGGAAAGCATTCTTACCATATTTGGAAGGGCTTAACAGCACACAGTTGAAGTTGGTTACCATTTACGCAAACCGAATCTCACATGCAAGGACAGGAAAATCAATTGATGCTGCTGCTAACGATTAG 4284 0.4218 MEEALELARAKDAKERMAGVERLHQVLEASRKSLSSTEVTSLVDCCLDLLKDSSFRVAQGALQALASASVLSGDHFKLHFNALVPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWTCKNWRVREEFARTVTSAIGLFSSTELPLQRAILPPTLQLLSDPNPAVKEAAILCIEEMFAQAGSQFRDELQRHNLTSSLVKYINARLEGIQPKVQSSNGISSGYNIPGEINSKKSSPKAKSSSKETSRFGGEGDVTEKGIEPIKVYSEKEFIREIEKISSTLVPEKDWSVRIAALQRIEGLVLGGAADYPCFFGILKQLIGPLSTQLSDRRSTIVKQACHLLCFLSKDLLGDFEACAEMFIPVLLKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIVDCAKNDRSAILRARCCDYALLILEHWPDAPEIQRSADLYEDMIRCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPSIQRLINEEDGGKHRRHASPSIRDRSAPMSSTPNLTGYGTSAIIAMDRSSSLSSGTSMSSGVLLSQAKPLGKGTERSLESVLHASKQKVSAIESMLRGLDLSNKHNSSALRSSSLDLGVDPPSSRDPPFPAAVSASNHLTTPSTTESSGLGVNRGSSRNGGLGLSDIITQIQASKDSSKLSYISNVGIEPSSDLLSYTSKRATEKLQGSSVDENSYTRETRRYMNPNVDRQYMDASYRDGNYRDSQNGYVPNFQRPLLRKNVTARVSAGRRRSLDDSQLSVGEMSNYADGPASLHEALTEGLSSGSDWSARVSAFNYLHLLLEQGQKGIQEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIRTCRKPFEGYMERMLPHVFSRLIDPKELVRQACSMTLEANAKTYSIDSLLPALLRSLDEQRSPKAKYAVIEFAIGSFNKHAMNPEGAANIGILKLWLAKLAPLVHDKNTKLKEAAITCIISVYSHFDSSAVLNFILSLSVDDQNSLRRALKQRTPRIEVDLMNYLQNKKERRNKSSYDPSDNVGTSSEEGYAGLSRKAHYIGRYSGGSLDSDGGRKWNSQDSNLVKASLGQSASDETEEHLYQTDCDSGIVSSKAKDHSYTVNSMDQNFGFQTGQLGYVDSSMNFEGLSSDVDANGLLSLEHLNIAEGFEHLSELNHNHHSAEDVTVNHLTNTGLGIPQILHMICSGGDGNTISSKRTALLQLVEASVANDHSVWIQYFNQILTVVLEVLDDSDSSTRELALSLILEMLKNQKDAMENSVEVVIEKLLNVTKDIVPKVSNEAEHCLTIVLSQNDPFRCLSVIIPLLVTEDEKTLVTCINCLTKIVGRLSQEELMAQLPSFLPALFEAFGNQSADIRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQLKLVTIYANRISHARTGKSIDAAAND* 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4074 1427 Gene3D - 263 505 IPR011989 -
Tpr1g4074 1427 PANTHER CLASP 28 1418 - -
Tpr1g4074 1427 MobiDBLite consensus disorder prediction 233 261 - -
Tpr1g4074 1427 Gene3D - 785 1010 IPR011989 -
Tpr1g4074 1427 PANTHER PROTEIN, PUTATIVE-RELATED 28 1418 - -
Tpr1g4074 1427 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Tpr1g4074 1427 SUPERFAMILY ARM repeat 3 1394 IPR016024 -
Tpr1g4074 1427 MobiDBLite consensus disorder prediction 1024 1043 - -
Tpr1g4074 1427 Pfam HEAT repeat 160 186 IPR000357 GO:0005515
Tpr1g4074 1427 MobiDBLite consensus disorder prediction 496 524 - -
Tpr1g4074 1427 Gene3D - 1207 1417 IPR011989 -
Tpr1g4074 1427 Gene3D - 1 221 IPR011989 -
Tpr1g4074 1427 MobiDBLite consensus disorder prediction 624 647 - -
Tpr1g4074 1427 SMART TOG_3 1179 1420 IPR034085 -
Tpr1g4074 1427 SMART TOG_3 278 510 IPR034085 -
Tpr1g4074 1427 SMART TOG_3 3 224 IPR034085 -
Tpr1g4074 1427 SMART TOG_3 773 1016 IPR034085 -
Tpr1g4074 1427 Coils Coil 1262 1282 - -
Tpr1g4074 1427 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Tpr1g4074 1427 MobiDBLite consensus disorder prediction 623 647 - -
Tpr1g4074 1427 Pfam CLASP N terminal 281 496 IPR024395 -
Tpr1g4074 1427 Pfam CLASP N terminal 792 986 IPR024395 -
Tpr1g4074 1427 Coils Coil 10 30 - -
Tpr1g4074 1427 MobiDBLite consensus disorder prediction 246 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4074 Tpr-Chr1 46225565 46239746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4074 K16578 - gmx:100801377 2344.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4074 1 46225565 46239746 Tpr1g4074 1 46225565 46239746 ECH
Tpr6g3411 6 36828039 36844343 Tpr1g4074 1 46225565 46239746 PCT