Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3418 ATGTCTATCTTCTCCACTCTCAGAAAATCCATTTCACCCTTCACCCGCCATTTTTCAATCCAACGGTTCCAAATCCTCCACCCTTCAACATCACCATCTTCGCCGTCGACACTGATCTCTCGGAACACTCTTCTCGCCGCCATCGTATCAGGCACGAGTCTAGGGTTTCTTCTCTACACCACCGACTTTGATTCAACTCCTTTTCAATTCTCAATCTCTTCCTTCGTTGACCACTGGTCAACACCTAATTCCGAAGACCAAAATCAACGTCGTTTTTCACCTTCCTCATTCTTTTCCAAATTGTCTTTACCTGAAACTTCTAGTACCTTCCTTTTTGGAGAAGCATATAGGAGAAAAGTTTTCTTCAACTATGAGAAGCGAATTCGGTTGCGAAGTCCTCCCGAAAAGGTTTTTGAATACTTTGCATCTTATCGATCACCAGAAGGAGAAGTACTCATGATACCTGCAGACCTAATGAGGGCTGTAGTTCCTGTTTTCCCTCCATCTGAATCTCACCTTGTTAGAGATGGATACTTGAGAGGAGAAAGAAACCCTGGTCATTTACGCTGCTCTCCTTCAGAATTTTTTATGCTTTTTGATGTTAACAGTGACGGGCTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCAGAATCAAGCTTTTCTGTGGCATTTAAAATGTTTGATGTGGACAATAATGGGGAGATAACCAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCATCATCGACAAGGTGTTCAACACAGGGATGGACTGCGAACTGGTCTAAACGTGAATGATTCTGTGGAAAATGGAGGGCTGTTGGAACACTTTTTTGGTAAAGATGGAAAAAGTTCCCTCCAACTTGATAAATTCGTACAATTTTTACGAGACTTAAATGATGAAATTTTGAGGCTGGAGTTTGCTCATTATGACTACAAATCTCGAAAAACAATTTCAGCCAAGGACTTTGCTCTCTCCATGGTTGCTTCTGCTGACATGAGTCATCTAGGCAAGTTGCTTGAACGGGTTGATGAATTGAATAATGATCCATGCTTTAAGGATGTGCGCATCACTTTTGAGGACTTCAAAATCTTCGCAGAGCTACGGAAAAAGCTATTTCCATTGTCATTAGCCCTTTTCAGTTTTGGAAAAGTAAATGGTCTGTTGACGAGAGATGATTTTCAGCGAGCAGCATCACATGTTTGTGGCATATCTCTTTCGGACAACGTGGTTGATATTGTTTTCCATTTGTTTGATACAAACCAAGACGGAAACCTAAGTACAGATGAGTTTGTAAGAGTTCTACACAAGCGAGAAAGGGACATCGGACATGCTGTGGGGACAGGAATGTTGGGTTTGTTGTCTTGCTGCTGGAACTGTAAAGAAAACATCTCATCTTCACGGTTGTTTTCCTCATAG 1446 0.4122 MSIFSTLRKSISPFTRHFSIQRFQILHPSTSPSSPSTLISRNTLLAAIVSGTSLGFLLYTTDFDSTPFQFSISSFVDHWSTPNSEDQNQRRFSPSSFFSKLSLPETSSTFLFGEAYRRKVFFNYEKRIRLRSPPEKVFEYFASYRSPEGEVLMIPADLMRAVVPVFPPSESHLVRDGYLRGERNPGHLRCSPSEFFMLFDVNSDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVDNNGEITKEEFKKVMALMRSHHRQGVQHRDGLRTGLNVNDSVENGGLLEHFFGKDGKSSLQLDKFVQFLRDLNDEILRLEFAHYDYKSRKTISAKDFALSMVASADMSHLGKLLERVDELNNDPCFKDVRITFEDFKIFAELRKKLFPLSLALFSFGKVNGLLTRDDFQRAASHVCGISLSDNVVDIVFHLFDTNQDGNLSTDEFVRVLHKRERDIGHAVGTGMLGLLSCCWNCKENISSSRLFSS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3418 481 SMART efh_1 419 447 IPR002048 GO:0005509
Tpr1g3418 481 SMART efh_1 191 219 IPR002048 GO:0005509
Tpr1g3418 481 SMART efh_1 225 253 IPR002048 GO:0005509
Tpr1g3418 481 ProSiteProfiles EF-hand calcium-binding domain profile. 221 256 IPR002048 GO:0005509
Tpr1g3418 481 CDD EFh_MICU 226 447 - -
Tpr1g3418 481 Gene3D - 312 454 - -
Tpr1g3418 481 SUPERFAMILY EF-hand 312 447 IPR011992 -
Tpr1g3418 481 CDD EFh 194 251 IPR002048 GO:0005509
Tpr1g3418 481 Pfam EF-hand domain pair 396 445 IPR002048 GO:0005509
Tpr1g3418 481 Pfam EF hand 229 252 IPR002048 GO:0005509
Tpr1g3418 481 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Tpr1g3418 481 Gene3D - 171 259 - -
Tpr1g3418 481 SUPERFAMILY EF-hand 194 446 IPR011992 -
Tpr1g3418 481 ProSitePatterns EF-hand calcium-binding domain. 234 246 IPR018247 -
Tpr1g3418 481 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Tpr1g3418 481 Pfam EF hand 195 212 IPR002048 GO:0005509
Tpr1g3418 481 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 480 - -
Tpr1g3418 481 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 480 IPR039800 GO:0005509|GO:0006851
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3418 Tpr-Chr1 38466995 38473112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3418 45 412 EF-hand Containing Proteins AT4G32060 66.667 7.03e-175 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3418 K22827 - gmx:100806575 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3418 1 38466995 38473112 Tpr7g0666 7 5867191 5869584 PCT