Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3406 ATGGCTTCCAACAAGCTTAGTGCACTCATTATATTGTTTTCCCTCCTTGCTTATTCAACATTCTCTCATGCTTGTGGTTCATGCAAACCACCTCCAACACCGAAGCCTAGCCCTCCACCACCTTCACCTTGTCCTCCACCACCATCAAAAACACATCCTCCACCACATGCTAGCCCTCCACCTAAGGTTAGTAATCCACCACCAACACCCAATGCTAGTCCTCCACCTAAGGTTAGTACTCCACCACCTTCAACAACTCCAAATGCTAGTCCTCCACCTAAGGCTAGTGCTCCACCTCCTTCAACAACACAAAAATGTCCTAGTGACACATTAAAACTAGGTGTTTGTGCTGATGTTTTAGGACTTGTTAATGTTATTGTTGGAAGTCCTGCTTCAAGCAAGTGTTGTGCATTGATTCAAGGTTTGGCTGATTTGGATGCAGCACTTTGTCTTTGTACTGCTATTAAGGCTAATATTCTTGGTATCAACTTGGATGTACCTGTCACACTAAGTCTTCTACTTAGTGCTTGTGAAAAATCTGTTCCTTCTGGTTTCCAATGTTCTTAG 567 0.4356 MASNKLSALIILFSLLAYSTFSHACGSCKPPPTPKPSPPPPSPCPPPPSKTHPPPHASPPPKVSNPPPTPNASPPPKVSTPPPSTTPNASPPPKASAPPPSTTQKCPSDTLKLGVCADVLGLVNVIVGSPASSKCCALIQGLADLDAALCLCTAIKANILGINLDVPVTLSLLLSACEKSVPSGFQCS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3406 188 MobiDBLite consensus disorder prediction 29 100 - -
Tpr1g3406 188 Pfam Hydrophobic seed protein 106 188 IPR027923 -
Tpr1g3406 188 MobiDBLite consensus disorder prediction 27 104 - -
Tpr1g3406 188 Gene3D - 103 188 IPR036312 -
Tpr1g3406 188 SMART aai_6 106 187 IPR016140 -
Tpr1g3406 188 PANTHER - 1 188 - -
Tpr1g3406 188 CDD HPS_like 103 187 IPR027923 -
Tpr1g3406 188 PRINTS Proline rich extensin signature 31 47 - -
Tpr1g3406 188 PRINTS Proline rich extensin signature 59 71 - -
Tpr1g3406 188 PRINTS Proline rich extensin signature 71 92 - -
Tpr1g3406 188 PANTHER PROLINE-RICH PROTEIN DC2.15 1 188 - -
Tpr1g3406 188 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 109 187 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3406 Tpr-Chr1 38379752 38380652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3406 99 187 Acyl Lipid Metabolism Gene Families AT4G22490 39.326 1.19e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3406 - - mtr:MTR_1g012710 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3406 1 38379752 38380652 Tpr1g3406 1 38379752 38380652 ECH
Tpr1g3406 1 38379752 38380652 Tpr7g0657 7 5784084 5785146 PCT