Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3401 ATGGCGGAAACTAGTTTATCGTTGATAGTGCCAAACACAAAGAAGAAAACACCTCAATTTTCTTCTTCTTCTTCAGTTGAGCTTTTTTGTAGGAACACTTTGTTCTATGATAAGCTTCCTTCACAACCTTTAAGGCTTTCTGTTCTCAAATTAGACGGTTCTTCTTTCGATATTCAAGTTTCGAAGACCGCAACTATTGCAGAGCTTAAGGATGCTGTGGAAGCTGTTTTTAGTTACTCGCCTCAGCACGGTCCAGGCAAAATTTCATGGCCACATGTTTGGGGGCAGTTTTGCTTATGCTATGATGGAATGAAGCTAGTCACAGAGGAGGATCATCTTAGAAATTATGGCGTCAAGGATGGCGACCAGCTCAATTTCATCCGTCATGTATCAAACAATTGTGGTGTTCAAAGAAAGCGGTCAAAGAAAAGAGTTTTCCATATGAAACAAAACAGGAGGTGCAAGTCGTCGCAAGTGAGTTACTGCAAACAGAACGAAAATTGTGATGATGATGACAACGACATTGGCTCTGATGAGGAAGCCTTAGAGAATGCAGAGACCAAGCACCAAATTGAAAAACTGCATGTTAGAAAGAACAAGTTTACTGGCTTTGTGGGAGAGTTATTGCACACACCGCTGGCAGTCGTGAGAAAAACTAGAACTCAAAACCAGATTTTCCCGTCTACAATTTCCAAGTGTTTGATCGGCGGTCTTAAAAAGATTAGAAGGATTGTATCCTTTGGCAGGAGGAAGCAGTATCCTACACGGAGACAGTATCAATAG 783 0.4138 MAETSLSLIVPNTKKKTPQFSSSSSVELFCRNTLFYDKLPSQPLRLSVLKLDGSSFDIQVSKTATIAELKDAVEAVFSYSPQHGPGKISWPHVWGQFCLCYDGMKLVTEEDHLRNYGVKDGDQLNFIRHVSNNCGVQRKRSKKRVFHMKQNRRCKSSQVSYCKQNENCDDDDNDIGSDEEALENAETKHQIEKLHVRKNKFTGFVGELLHTPLAVVRKTRTQNQIFPSTISKCLIGGLKKIRRIVSFGRRKQYPTRRQYQ* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3401 260 CDD Ubl_SNRNP25 44 129 IPR040610 -
Tpr1g3401 260 Pfam Ubiquitin-like domain 44 130 IPR040610 -
Tpr1g3401 260 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 2 257 IPR039690 GO:0000398|GO:0005689
Tpr1g3401 260 SUPERFAMILY Ubiquitin-like 39 135 IPR029071 -
Tpr1g3401 260 PANTHER - 2 257 - -
Tpr1g3401 260 Gene3D - 39 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3401 Tpr-Chr1 38339171 38341928 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3401 - - gmx:100819176 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3401 1 38339171 38341928 Tpr1g3401 1 38339171 38341928 ECH
Tpr7g0652 7 5741479 5744312 Tpr1g3401 1 38339171 38341928 ECH
Tpr1g3401 1 38339171 38341928 Tpr7g0653 7 5744681 5745661 PCT