Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3398 ATGATGGATCCAATTAATCCTTTGCCTGCTGATGGACTTGATGTGGTCCATCAGAATGGTGTTCGTGATGAGCCTTCTAATTCTGGAGAGAACGGTGTTGTTTCAAATGATTTAGACCCTCATGTTGCTGAAACTATAGTTCTGAATGGAAATCTTGAAAGTTTCAACCAGTTAGAAAGCACTGCAACTGAAAACCCGCCTGTGGGGGAAATTGAAGGATCAAATGACAACGTGGATGGCAATAATATAACCAGTCCTAAGGAAAAGGAAGTGAAAATAACAGTTCAAAAGGAACAATCAAGAGCACAAAAGGGTCCTGTAAAGAGTAAGAATGCAAAGGTTGCTAGTTCAAGTGGCGTTCATGCAACTTTGGTGAAAAACAGCAAAACTGGAAAAGACAAACAGGCATCATCTGCTGTTTCAAACGGCACCTCTGCTTTTGATTCTCGTCCAAGACAGCAGCCTCTTAAAACCAAATCTTTCAATGATCGGCAGTCTCAATTGTCAAAGAATCCTTCAAAGTCTGCTGCAGCATCTTCTGAAGTTGCAGAGGAGAAGAAAAAGCCAATATCATCAAAAAAGGGACCCCTTGTTAAAGTTAAAGGAGAAGCAGAATCTTCTCCTAACAATGCCGAAGATGCCAAACCTCGTAGGGTGGGGACACTTCCAAACTATGGATTCAGTTTCAGGTGTGGTGAACGAGCTGAGAAAAGGAGAGAGTTCCTCACTAAGGTTGAGGAAAAGATTCAGGCAAAGGAGGAGGAGAAGAGCAGCTTGCAAGCAAAGTCCAAGGAGAGCCAAGAAGCCGAGATTAAAAAGCTTAGGAAGAGCCTAACTTTTAAAGCAACTCCATTGCCAACTTTCTATCAGGAGCCTGCTCCTCCTAAAGTGGAGCTGAAGAAGATACCAACTACAAGAGCAAAATCTCCCAAGCTCGGTCGGAAGAAGAATTCAACAAATTCTGAGTCTGATGGAAACGGAAGCACCAGTTCTCGACAAGGTCGTTTAAGTCTGAATGAGAAAGTGTTACAAAGCAACTCCACTAAAGAAGTTACCGTTGTCAATCCAAAGAAGCCGCTGCGCAAGTCCCTTCCTACTCGACTCACTCCTGAAAAGATCAATTCAGCAGCTGCACCAAAGAAAAATAGTGCAACAAAGAAAGCTACTAGCTTATCCAATGCTAAAGGGGAAGAGAAAACTGAGATCACTGAAGCCAATGAAGAAAACAGTACCTTGTCGAGTGAGACAAATGTTGCTCTACCTCTGAATGTGGTTCCTTCAGATAAGCCAAGTGAAGCAGAATCTCATGTGAATGGTGACATATTGGTTGAAGAGAATCCTCAGCTCGTGTTGTCCCAAGAACCGATCACAACCGTGCATTGA 1383 0.4295 MMDPINPLPADGLDVVHQNGVRDEPSNSGENGVVSNDLDPHVAETIVLNGNLESFNQLESTATENPPVGEIEGSNDNVDGNNITSPKEKEVKITVQKEQSRAQKGPVKSKNAKVASSSGVHATLVKNSKTGKDKQASSAVSNGTSAFDSRPRQQPLKTKSFNDRQSQLSKNPSKSAAASSEVAEEKKKPISSKKGPLVKVKGEAESSPNNAEDAKPRRVGTLPNYGFSFRCGERAEKRREFLTKVEEKIQAKEEEKSSLQAKSKESQEAEIKKLRKSLTFKATPLPTFYQEPAPPKVELKKIPTTRAKSPKLGRKKNSTNSESDGNGSTSSRQGRLSLNEKVLQSNSTKEVTVVNPKKPLRKSLPTRLTPEKINSAAAPKKNSATKKATSLSNAKGEEKTEITEANEENSTLSSETNVALPLNVVPSDKPSEAESHVNGDILVEENPQLVLSQEPITTVH* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3398 460 MobiDBLite consensus disorder prediction 376 391 - -
Tpr1g3398 460 MobiDBLite consensus disorder prediction 1 35 - -
Tpr1g3398 460 Coils Coil 242 272 - -
Tpr1g3398 460 MobiDBLite consensus disorder prediction 314 353 - -
Tpr1g3398 460 Pfam Targeting protein for Xklp2 (TPX2) domain 227 298 IPR027329 -
Tpr1g3398 460 MobiDBLite consensus disorder prediction 248 418 - -
Tpr1g3398 460 PANTHER PROTEIN WVD2-LIKE 5-RELATED 2 450 - -
Tpr1g3398 460 PANTHER PROTEIN WVD2-LIKE 4 2 450 IPR044833 GO:0008017
Tpr1g3398 460 MobiDBLite consensus disorder prediction 248 277 - -
Tpr1g3398 460 MobiDBLite consensus disorder prediction 57 225 - -
Tpr1g3398 460 MobiDBLite consensus disorder prediction 57 82 - -
Tpr1g3398 460 MobiDBLite consensus disorder prediction 83 97 - -
Tpr1g3398 460 MobiDBLite consensus disorder prediction 98 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3398 Tpr-Chr1 38315553 38320589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3398 - - gmx:100786958 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3398 1 38315553 38320589 Tpr1g3398 1 38315553 38320589 ECH
Tpr1g3398 1 38315553 38320589 Tpr7g0640 7 5659775 5664556 PCT