Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2263 ATGAACTACAACCGTTTGATTTCCGGCGGAGGAAGACTTCTCCGTCGACTATCCACGGAGGCAACGGTGGCTGAGATTCCGAAGAGAAAACCAAGTCTTTACCAAAAGCTAGCGGAACTAGAAAAAACCGGCGGAACAGTGTCGCAGACGTTGAATCGGTATATAATGGAAGGAAAAGCCGTCGGAAAAGGTGAACTCGAGAAATGCGTCGAGGAGCTTCGAAAGTATCGTAGATTTCAGCACGCATTCGAGATACTGGAATGGATGATGATGAGGAAAATCAATTTTTCATGGGATAATTATGCAGTGTATTTAGATCTTATGTCAAAAGTGAAAGGTGTGATTGATGCTGAAAATTACTTCAATAGTCTTCCAAATCCTGCTAAGAACAAGTACACGTGGGGTTCTCTACTAAATTGTTATTGCAAAGAATTGATGCTAGATAAGGCATTGTCTCATTTTGAGAAGATGGATGAATTAGGGTTTGTTACTAGTTTATCTTTCACCAATTTGATGACTTTGTATATGAAGTTAGGTCAACCTCTGAAAGTTCATGAGTTAGTTAATGATATGAAGGTGAGGAAAATGCGTATGACTGGATTTACGTATATTGTTTGGATGAATAGCTGCGCTGCTTTGAATGATCTTGATGGGGTTGAAAATGTTTATAAGGAGATGAAAAGAGAAAATGGAGACAAAATTGATTGGAAGACTTATAGTAACCTTGCTGCTATTTATGTAAAAGCTGGAGAATTTGTGAAAGCTGAGTTGATGCTTAAGAAGATGGAACAAGTAGTGAGGCCGCAGCAACGCGAAACTTATCATTGTTTGTTGAGTCTTTATGGTGGGACTGGTAATGTTACAGAGGTTTATAGAGTGTGGAGCAAGCTCAAGACAGTCTCCCCGGTGACTAATCGGAGCTATCTTATTATGCTTTCTACCCTTCGAAGGCTTGAAGATATGCAGGGTATAATAAAATTGTTTAAGGAGTGGGAATCTAGGCGTGTTAATTATGATCCAAGGTTGGTTTCTGTTGCAGTAGAAACTTACTTGAGTCAAAACAGGGATGAAGAAGCTGTGTCGCTCTTTAAGGAGGTTCTCAAGACGTGCAGAGGACCTTTCTTTAGGATTCGGGAAATGTTCATGGTGTCTTTATTGGAGAAAGGTCAACTGGATGGTGCTATGAGCCACTTAGAGGCTGCACTTTCAGAAGTCTCCGGTGATAAATACCGCCCTTCACCACAAGTTGTGAGTGCTTTTCTTATGTATTATGAAGACAAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTCAGGAGTCACAATTTTGATGAATCCTGTATTACAGCTTGCATTACTGCATCCGAATCATCTCCTGGTATTCATCCGGTATTGAAGGAAGATTCTTATACCGATCATGTGCCCCGGAACTTGTAA 1443 0.4033 MNYNRLISGGGRLLRRLSTEATVAEIPKRKPSLYQKLAELEKTGGTVSQTLNRYIMEGKAVGKGELEKCVEELRKYRRFQHAFEILEWMMMRKINFSWDNYAVYLDLMSKVKGVIDAENYFNSLPNPAKNKYTWGSLLNCYCKELMLDKALSHFEKMDELGFVTSLSFTNLMTLYMKLGQPLKVHELVNDMKVRKMRMTGFTYIVWMNSCAALNDLDGVENVYKEMKRENGDKIDWKTYSNLAAIYVKAGEFVKAELMLKKMEQVVRPQQRETYHCLLSLYGGTGNVTEVYRVWSKLKTVSPVTNRSYLIMLSTLRRLEDMQGIIKLFKEWESRRVNYDPRLVSVAVETYLSQNRDEEAVSLFKEVLKTCRGPFFRIREMFMVSLLEKGQLDGAMSHLEAALSEVSGDKYRPSPQVVSAFLMYYEDKTDLDGVDELSKILRSHNFDESCITACITASESSPGIHPVLKEDSYTDHVPRNL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2263 480 PANTHER OS01G0301500 PROTEIN 3 471 - -
Tpr1g2263 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Tpr1g2263 480 Gene3D Tetratricopeptide repeat domain 33 164 IPR011990 GO:0005515
Tpr1g2263 480 SUPERFAMILY TPR-like 120 403 IPR011990 GO:0005515
Tpr1g2263 480 Gene3D Tetratricopeptide repeat domain 165 300 IPR011990 GO:0005515
Tpr1g2263 480 PANTHER OS12G0527900 PROTEIN 3 471 - -
Tpr1g2263 480 Pfam PPR repeat 238 263 IPR002885 -
Tpr1g2263 480 Pfam PPR repeat 167 194 IPR002885 -
Tpr1g2263 480 Pfam PPR repeat 132 162 IPR002885 -
Tpr1g2263 480 Pfam PPR repeat 201 230 IPR002885 -
Tpr1g2263 480 Gene3D Tetratricopeptide repeat domain 301 461 IPR011990 GO:0005515
Tpr1g2263 480 TIGRFAM PPR: pentatricopeptide repeat domain 201 229 IPR002885 -
Tpr1g2263 480 TIGRFAM PPR: pentatricopeptide repeat domain 132 163 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2263 Tpr-Chr1 25398241 25400419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2263 28 459 EF-hand Containing Proteins AT1G02150 32.805 6.89e-76 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2263 - - gmx:100781679 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2263 1 25398241 25400419 Tpr1g2263 1 25398241 25400419 ECH
Tpr1g2263 1 25398241 25400419 Tpr6g0705 6 5837490 5839479 PCT