Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2252 ATGGGAGCAGATGAAGTACAACTCGACGACAAAGCAAAGAGAATGAGAGATCTGCTTTCCAGTTTCTACTCTCCAGACCCTTCCATTTCTTCCACCGGAATCACTTCTGCCAAATTCGCCTCTCTCGATGACATTAACTCTTCCCAATTCGATCCCGATCAATACATGAATATCTTGGTACATAAGTCCAATATGGAAGGTTTACTTCAACGACATGTTGAAATGGCAGCTGAAATTAAGAATCTTGATACTGATTTGCAAATGCTTGTGTATGAGAATTATAACAAGTTCATTAGTGCTACAGATACTATAAAGAGGATGAAAAGTAATATTTCAGGGATGGAGATTAATATGGAACAGCTTCTTGACAAGATAATGTCTGTGCAGTCGAGGAGTGACAATGTGAACACTTCTCTATTTGATAAAAGGGAGCATATTGAGAAACTTCATAGGACTTGTAATCTTCTTCGGAAAGTTCAGTTTATATATGATCTTCCTGATAGACTTGGCAAGTGCATAAAGTCAGAGGCGTATGCAGATGCAGTCAGGTTTTACATTGGAGCAATGCCAATTTTTAAGGCATATGGAGATTCATCATTCCAGGACTGTAAGAAAGCATCTGAAGAGGCAATAACTAATGTAATAAAAAACTTGCAGGGAAAGCTATTCTCAGATTCTGAATTAATACAAGTGAGAGCGGAGTCTGCAGTGCTCCTTAAGCAGTTGGATTTTCCGGTGAACAATTTGAAGGCAAAGTTACTTGAGAAATTAGAACAATCCATTACAGACATTCGGCTGAGCCCTGAGGAAATAAACAATGGTTCAGGAGACCTTTCTCCTTCAGCATCTGCTCACAAGGCAGCAACTCATGAATTTATGGAGGCAGTTCGTGCTCTTCTAGTAATATTTCCGGATTCAGAAAAGCAGTTGGTCAAACTTTCTCAAGATTTGGTTACTAAGAGTTTTGCAATTGCGGAGGAGTATGTGAAGACACGGATTCAGCCAGCAGATTTACTGGGTGTTCTTGGGGTTGTCTGGAATGATGTACTTCTTATAGATGAAGTCTTACCAGAAGCAGCTCTCTCTAACCATTCTCTTCAGGCTGCAAATGTTGTTGTCAAGTTGTATGTTAGAAGTGCATTTTCTCATCTTCTGCAAGACATCTCTGATTCCTTCTTACAAGTCCTGAAAAAGGACGGAGCAGCGCAATACTCTCTTGAAGCTGTTCTTGGAGCTAGTACAAAAGCAGTTCTTCAAGGAGGCATGAACGTCTTGCTGGACTTCCGCAAAATTTTAGATGATGATTCTGAGATCTTAGTTAGACTAAGAGAGTTATTTGTTGATTTGGTTCAAGAAGGATTTCAAGACTTTTTTAGGCAACTTGAAGATCAGTTCCTCCTATTTTCAGGAAGAAATAGTTCTTCAGCTATTCAAGTACATGGGTTGGCAGAGGGACCTATTGTTGAAAAAGCTTTTCCTGGCCTTGTCCTAGTGCTAGCACAATTGTCTGCTTTTATTGAACAAACTGTCATCCCAAAAATCACTGAGGAAATAGCTGCTTCCTTTTCTGGTGGTAGTGTTAAAGGCTATGAATCTAGACCTGCATTTGTTCCTGGAGAAATTTGTAGAAAATTCCGGTCAGCTGGTGAAAAATTCCTGCACCTGTATATAAATATGAGAACCCAGAGGATTTCACTTATCCTGAAGAAGAGGTTTACAACACCTAATTGGGTTAAGCATAAGGAGCCAAGAGAAGTGCACATGTTTGTTGATTTTTTTCTTCAAGAGCTTGAAGTTATAGGTAACGAAGTGAAGCAGATTTTACCTCAAGGTATACGTAAGCACCGCAGGACGGATAGTAATGGAAGTAGTGTTTCATCAAGGAGCAACCCCTTGCGGGAGGAGAAATTGGGTAGGTCAAATACTCAAAGGGCAAGGAGCCAGCTTCTGGAAACACATCTAGCAAAACTGTTTAAGCAAAAAGTTGAAATTTTCACAAAAATAGAATATACACAGGAGTCTGTTCTTACTACTATAGTGAAATTCTGCTTGAAAAGTGTTCAAGAATTTGTCCGTCTCCAAACTTTTAACAGGAGTGGATTCCAACAAATTCAACTGGATGTCCAATTCCTAAGGAACCCTTTAAGGGAAATAGTTGAAGATGAAGCTGCAGTCGACTTCTTGTTGGACGAGGTGATTGTTGCGACTGCAGAGCGGTGTCTTGATCCAATTCCATTGGAGCCTCCCATACTGGACAAACTTGTACAAGTAAAGTTGGCTAAAACCAAGGAACAAAACACAACAATCTCTTCATAA 2316 0.3981 MGADEVQLDDKAKRMRDLLSSFYSPDPSISSTGITSAKFASLDDINSSQFDPDQYMNILVHKSNMEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKSNISGMEINMEQLLDKIMSVQSRSDNVNTSLFDKREHIEKLHRTCNLLRKVQFIYDLPDRLGKCIKSEAYADAVRFYIGAMPIFKAYGDSSFQDCKKASEEAITNVIKNLQGKLFSDSELIQVRAESAVLLKQLDFPVNNLKAKLLEKLEQSITDIRLSPEEINNGSGDLSPSASAHKAATHEFMEAVRALLVIFPDSEKQLVKLSQDLVTKSFAIAEEYVKTRIQPADLLGVLGVVWNDVLLIDEVLPEAALSNHSLQAANVVVKLYVRSAFSHLLQDISDSFLQVLKKDGAAQYSLEAVLGASTKAVLQGGMNVLLDFRKILDDDSEILVRLRELFVDLVQEGFQDFFRQLEDQFLLFSGRNSSSAIQVHGLAEGPIVEKAFPGLVLVLAQLSAFIEQTVIPKITEEIAASFSGGSVKGYESRPAFVPGEICRKFRSAGEKFLHLYINMRTQRISLILKKRFTTPNWVKHKEPREVHMFVDFFLQELEVIGNEVKQILPQGIRKHRRTDSNGSSVSSRSNPLREEKLGRSNTQRARSQLLETHLAKLFKQKVEIFTKIEYTQESVLTTIVKFCLKSVQEFVRLQTFNRSGFQQIQLDVQFLRNPLREIVEDEAAVDFLLDEVIVATAERCLDPIPLEPPILDKLVQVKLAKTKEQNTTISS* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2252 771 Pfam Vps51/Vps67 45 130 - -
Tpr1g2252 771 PANTHER UNCHARACTERIZED 1 731 IPR014812 -
Tpr1g2252 771 MobiDBLite consensus disorder prediction 611 644 - -
Tpr1g2252 771 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 1 731 - -
Tpr1g2252 771 Coils Coil 104 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2252 Tpr-Chr1 25315326 25323078 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2252 K20296 - gmx:100818891 1230.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2252 1 25315326 25323078 Tpr1g2252 1 25315326 25323078 ECH
Tpr6g0468 6 3804994 3810806 Tpr1g2252 1 25315326 25323078 PCT