Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2246 ATGGCCATCACTACTCCCTATCAAAATTTCACAGAAAAGAAACATTGGTGGCTCACAAATCGCATGATTGTTGAGAAATACATCAAAGATGCAAGAACACTCATTGCATCACAAGAACGCAACGAGATTGTTTCAGCTCTTAATCTTCTAGATGCAGCTTTAACTATATCTCCAAGTTCAGATCAAGCTCTTGAATTAAAAGCTAGATCTTTACTCTATTTAAGAAAATTCAAAGATGTAGCTAATATGCTTCAAGATTATATTCCAAGTTTGAAAATGGCTAATGATGATTCAAGCTCTGTTTCTTCTGATGGTTCTTCTCAACAACTTTCAAGAGAAGGAGTTAAGTTACTTTCTTCATCGGATTCTTCTGTTCCAGATCAGAGTTTCATTAAGTGTTTCTCTGTTTCTGATTTGAAAAAACGTGTCATGGCTGGTCTCTGTAAAAGTGGTGATAATCAAGGTTATTGGAGATACTTAGTTTTGGGGAAAGCATGTTGTCACTTAGGTCTAATGGAAGATGCAATGGTTCTACTTCAAACCGGAAAACGTCTGGCCAGCGCTGCATTCCGCCGCGAAAGCGTGTGTTGGTCCGACGACAGTTTCTCTCTATGGAACTCACCGTTCACCGGCGACGATACAGTTTTAAAGCCACCTGCAACAACACCACCAAAAAGTCCTTTAACAGAATCTGAAACTGTAAACCAACTGTTAGCACACATAAAATTCCTCCTCCGTCGACGCGCTGCCGCAATTGCTGCGATGGATGCCGGACTTCACTCGGAAGCTATTCGGCATTTCTCGAAAATCGTTGACAGCCGTCGCGGTGCTCCGCAAGGCTTCCTCGCGGAATGTTACATGCATAGAGCCACTGCGAATCGTTCTGCAGGTAGAATTGCTGATTCAATTGCTGATTGTAACAGAACATTAGCACTTGATCCTACATGTATTCAAGCACTTGAATCTAGAGCTTCAATTCTAGAAACAATTCGTTGCTATCAAGATTGTCTTCATGATCTCGAACATTTGAAACTCTTATACAACACAATTCTCCGTGATCGGAAACTCGCCGGTCCGTTATGGAAGCGCCACAATGTACGTTATAATGAAATTCCTGGAAAACTCTGCACATTAGCAGCTAAAATTCAACAGCTGAAACAAAAGGTTTCTTCCGGCGGCGAAAATTCGCGGAATGTGGACTATTACGGTTTGATCGGATTGCGACGCGGTTGCTGTCGATCCGAGTTGCAGAGGGCTCATCTTTTGCTTTGTTTGAAGCATAAACCGGAGAAGGCCACGTGTTTCATCGAACGGTGTGAACTCGCCGATGAACGCGATATTGATTCGGTTAAAGATAGAGCGAGAATGGCTTCTATGTTGTTGTATAGGTTGCTTCAGAAAGGTTACACAAATGTTATGAATTCTATTGCTGAAGAAGAAAATGCTGACAAACAGAAGAAGATTGTTTTACAGTTACAACAAACTGAACAGAAACTACTTCTAAATGCAAATTCAAATTCAAATGCAAATGCAAATTCAATTGTTGTTCAAGTGATGAAAAAGAAAAGTAGAGATGAAATGGAGGATAAGTTTGCAATGTCTTCACCTAGTATTGCAAATCCAACGGTGTTTCAAGGGGTGTTTTGCCGTGATCTAACGGTGGTGGGGAATTTGCTTTCACAGAGGTTTAGTAGTAGGTCAATTCCGGTCAAATATGAGGCACTTAGTTGTTGA 1734 0.41 MAITTPYQNFTEKKHWWLTNRMIVEKYIKDARTLIASQERNEIVSALNLLDAALTISPSSDQALELKARSLLYLRKFKDVANMLQDYIPSLKMANDDSSSVSSDGSSQQLSREGVKLLSSSDSSVPDQSFIKCFSVSDLKKRVMAGLCKSGDNQGYWRYLVLGKACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSDDSFSLWNSPFTGDDTVLKPPATTPPKSPLTESETVNQLLAHIKFLLRRRAAAIAAMDAGLHSEAIRHFSKIVDSRRGAPQGFLAECYMHRATANRSAGRIADSIADCNRTLALDPTCIQALESRASILETIRCYQDCLHDLEHLKLLYNTILRDRKLAGPLWKRHNVRYNEIPGKLCTLAAKIQQLKQKVSSGGENSRNVDYYGLIGLRRGCCRSELQRAHLLLCLKHKPEKATCFIERCELADERDIDSVKDRARMASMLLYRLLQKGYTNVMNSIAEEENADKQKKIVLQLQQTEQKLLLNANSNSNANANSIVVQVMKKKSRDEMEDKFAMSSPSIANPTVFQGVFCRDLTVVGNLLSQRFSSRSIPVKYEALSC* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2246 577 SUPERFAMILY TPR-like 249 344 IPR011990 GO:0005515
Tpr1g2246 577 PANTHER - 5 577 - -
Tpr1g2246 577 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 5 577 - -
Tpr1g2246 577 CDD DnaJ 400 433 IPR001623 -
Tpr1g2246 577 Gene3D Tetratricopeptide repeat domain 212 357 IPR011990 GO:0005515
Tpr1g2246 577 SMART tpr_5 283 316 IPR019734 GO:0005515
Tpr1g2246 577 SMART tpr_5 156 189 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2246 Tpr-Chr1 25231282 25234112 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2246 - - gmx:106797171 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2246 1 25231282 25234112 Tpr1g2246 1 25231282 25234112 ECH
Tpr6g0476 6 3938417 3941518 Tpr1g2246 1 25231282 25234112 PCT