Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2159 ATGTCTTCCAATTCAACAGAGGAGGAAGATGCCGTATGCATAAACGAGGCGTTGACGGACGACGAGCTCCGTTCAATTCTGGTCAGGGTGGAGACCGAGAAAGACAAGGAAATTTTCGGTTTGGTTTGTAAGCGATGGCTTCGGTTACAGAGCACAGAAAGGAAGAAACTCGCCGCACGTGCCAGTCCTCATATGCTTCGTAAAATGGCTGATAGGTTCACACGTTTGGTTGAATTGGACCTTGCTCAGTCCATTTCTCGTTCTTTCTATCCTGGTGTTACTGATTCTGATCTTGCTGTTATTGCTAATGGTTTCACATGCTTGAGGATCCTCAATTTGCATAATTGTAAAGGAATTACGGATGTTGGAATGAAAGCTATTGGTGATGGTCTTTCCTTATTACAGTCCTTGGATGTGTCCTACTGCAGAAAGCTGACTGACAAGGGATTATCTGCTGTTGCCAAAGGTTGTTGTGACTTGCAGATATTGCATCTTACTGGGTGCAGATTTGTTACGGATAGTATACTAGAAGCTCTGTCCAAAAACTGTCGTAACTTAGAAGAGTTGGTATTGCAAGGATGCACAAGTATCACTGACAATGGACTGATAACCCTTGCAAGTGGTTGCCAGAGAATCAAGTTTTTAGACATCAATAAATGCAGTAATGTCAGTGATGTTGGGGTTTCTAGTATTTGTAAGGCTTGTTCTTCTTCTCTCAAGACATTGAAATTGTTAGATTGCTACAAAGTTGGGGATGAAGCCATATTATCATTGGCCAAATTCTGTGATAATCTGGAGACTTTGATCATTGGTGGATGCCGGGATGTGTCCAACGACGCAATTAAGTTGCTGGCTACTGCTTGTAGAAATAAACTTAAAAACTTGAGGATGGATTGGTGTCCGAACATTTCTGACTCTTCGTTGAGCTGTATTTTAAGTCAATGCAGAAACCTTGAGGCGCTGGACATCGGTTGCTGTGGAGAGGTGACAGATACTGCTTTTCATCTTATAAGCAATGAGGAGCCTGGTTTGAGTTTGAAGATTTTGAAAGTTAATAATTGTCCAAAAATCACAGTGGTTGGTATAGGCATTCTTCTGGGTAAATGCAGTTACCTGGAGTACTTGGATGTGAGGTCATGCCCACATATTACAAAGGCTGGCCTTGACGAGGCTGGTCTCCATTTTCCTGACTGTTGTAAGATTAATTTTAATGGTAGCATCAATGAGCCTGCTGTTCTTCTTTGA 1245 0.4209 MSSNSTEEEDAVCINEALTDDELRSILVRVETEKDKEIFGLVCKRWLRLQSTERKKLAARASPHMLRKMADRFTRLVELDLAQSISRSFYPGVTDSDLAVIANGFTCLRILNLHNCKGITDVGMKAIGDGLSLLQSLDVSYCRKLTDKGLSAVAKGCCDLQILHLTGCRFVTDSILEALSKNCRNLEELVLQGCTSITDNGLITLASGCQRIKFLDINKCSNVSDVGVSSICKACSSSLKTLKLLDCYKVGDEAILSLAKFCDNLETLIIGGCRDVSNDAIKLLATACRNKLKNLRMDWCPNISDSSLSCILSQCRNLEALDIGCCGEVTDTAFHLISNEEPGLSLKILKVNNCPKITVVGIGILLGKCSYLEYLDVRSCPHITKAGLDEAGLHFPDCCKINFNGSINEPAVLL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2159 414 Gene3D Ribonuclease Inhibitor 172 410 IPR032675 -
Tpr1g2159 414 SMART LRR_CC_2 289 314 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 131 156 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 236 261 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 209 234 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 369 394 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 105 130 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 343 368 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 157 182 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 262 287 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 183 208 IPR006553 -
Tpr1g2159 414 SMART LRR_CC_2 315 340 IPR006553 -
Tpr1g2159 414 PANTHER OS03G0633100 PROTEIN 182 414 - -
Tpr1g2159 414 PANTHER OS03G0633100 PROTEIN 5 209 - -
Tpr1g2159 414 Gene3D Ribonuclease Inhibitor 16 171 IPR032675 -
Tpr1g2159 414 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 5 209 - -
Tpr1g2159 414 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 182 414 - -
Tpr1g2159 414 Pfam Leucine Rich repeat 182 206 IPR001611 GO:0005515
Tpr1g2159 414 Pfam Leucine Rich repeat 314 331 IPR001611 GO:0005515
Tpr1g2159 414 Pfam Leucine Rich repeat 106 127 IPR001611 GO:0005515
Tpr1g2159 414 Pfam Leucine Rich repeat 209 232 IPR001611 GO:0005515
Tpr1g2159 414 Pfam Leucine Rich repeat 157 180 IPR001611 GO:0005515
Tpr1g2159 414 Pfam Leucine Rich repeat 134 154 IPR001611 GO:0005515
Tpr1g2159 414 Pfam Leucine Rich repeat 368 388 IPR001611 GO:0005515
Tpr1g2159 414 SUPERFAMILY RNI-like 66 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2159 Tpr-Chr1 22987057 22989486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2159 K10268 - gmx:100781531 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2159 1 22987057 22989486 Tpr1g2159 1 22987057 22989486 ECH
Tpr6g3395 6 36643082 36643729 Tpr1g2159 1 22987057 22989486 PCT