Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2078 ATGAAGCTAATTCGTCAGAGGATCTTAATTATCTCTCTCCTCTTTATCTCCCTTGTTGCTCCTCTCATTTTCCTCGGGAGAAGAGAGTTCCTTGAAGATTTGTATCGTGTTATTCAAGACGGTTCTGAAGAATTAGAAGAGCCAAATCAAGTTGTTCATAAAGAAAAAGATGTTTCAACAATTAGTTACAGTTCAAACGAGAATAACGATGCCGATGAACCTAGAATTCAAGTGTTTGAAAGAAATGGATTCGGCCATGATGGCAGACAAGACGAGGATGCTCGGAAAAAATATTCATCCTCCACGGACGAAGATACAAATGTACATGCTATTCCACATAGAACGTCGAAGGAGAATATTAGTGTGACAAATAGGCCATCAGATCGAATAGAAGACCGTCATCATCTTTTAAATCCACACTCTCAAGAAGTGAAAAATCAAAAGGTTCGAGAGATTAAGGATCAAATTTTAATGGCTAAAGTATACTTGAAGTTTGCGCCACCAGGCAGCAACTCCCGCTTGAAGGAACTGGAGCTGCAAATGAAAGAGATGGAACGAGCAGTAGAAGGAGCCACCCGGGATTTAGATTTGTCTAGGAGTGTTTTGCAGGCAATGAGACACATGGAGGCCTCACTGTCTAGTGTCGGCCGTGCTTTCTCAGACTGTTCTTTGGTTTCTAAGCTTCAAGCAGTGAAGCGCAAAACTGAAGAGCAAGTTCGTTCTCAGAGAAGCCAAGCAACATATCTTGTTCATCTTGCTGTAAGGACTGCCCAAAAAAGCTTTCACTGTCTTTCTATGCGGCTGACTGCTGAATATTTTGCCCTGAGGCCTGAGGAGAGAAAGCTTCCAAATGAGAATAAGATTCATCATCCAGATCTTTATCATTATGCTGTCTTCTCTGACAATGTTCTGGCATGTGCAGTCGTTGTTAACTCTACTGTCTCTACAGCCAAGGAACCAGAGAAACTTGTTTTCCATATAGTGACTGATTCACTCAACTTGCCAGCGATCTCAATGTGGTTCTTGATAAACTCTCCCGGCAATGTCACAGTCCATATACAGAGCATAGACAACTTTGAATGGTTGTCGAAATACAATACCTTCTTTAAAAATGGTAACGGCGATCCAAGATATACTTCTGAATTGATCTACTTGCTTTTCTACCTGCCAGAAATTTTCCCTGCCCTAAATAAGATTGTGGTCTTTGATCATGATGTGGTGGTTCAACAAGATCTCGGTGGGCTATGGAATACCAATTTGAAGGGAAATGTTATCGGAGCAGTTGGAACTTGTCAGGAAGGCAAAGCCCCATTTCATAGGATTGATGCGTTCATAAACTTCTCAGATCCACTAATTGGCCGGAGTTTTGACGTCAATTCTTGCACATGGGCGTTTGGGGTGAATTTGTTTGATTTGCAACAATGGAGAACACTTAATTTAACGGCTGTTTATCACAAATATTCACAAATGGGTTCTAAGAAGCCATTATGGAATTGGAACGTTGCACGTATGCCTTTAGGTTGGCTCACCTTCTATAACAAGACAGAGTTGTTGGACAGACGATGGCACATTCTTGGCCTCGGTCATAACTCGGGAGTCGATCGAAATGAGATTGATCAGGCTGCCGTTATACACTATGATGGGATTAGGAAGCCATGGTTAGATATTGCAATGGGCAGATATAGAGGTTATTGGACCAAATTTTTGGATTTTGACCACCCTTTTCTGCAACAGTGCAATCTCCAGGTTTAG 1752 0.4167 MKLIRQRILIISLLFISLVAPLIFLGRREFLEDLYRVIQDGSEELEEPNQVVHKEKDVSTISYSSNENNDADEPRIQVFERNGFGHDGRQDEDARKKYSSSTDEDTNVHAIPHRTSKENISVTNRPSDRIEDRHHLLNPHSQEVKNQKVREIKDQILMAKVYLKFAPPGSNSRLKELELQMKEMERAVEGATRDLDLSRSVLQAMRHMEASLSSVGRAFSDCSLVSKLQAVKRKTEEQVRSQRSQATYLVHLAVRTAQKSFHCLSMRLTAEYFALRPEERKLPNENKIHHPDLYHYAVFSDNVLACAVVVNSTVSTAKEPEKLVFHIVTDSLNLPAISMWFLINSPGNVTVHIQSIDNFEWLSKYNTFFKNGNGDPRYTSELIYLLFYLPEIFPALNKIVVFDHDVVVQQDLGGLWNTNLKGNVIGAVGTCQEGKAPFHRIDAFINFSDPLIGRSFDVNSCTWAFGVNLFDLQQWRTLNLTAVYHKYSQMGSKKPLWNWNVARMPLGWLTFYNKTELLDRRWHILGLGHNSGVDRNEIDQAAVIHYDGIRKPWLDIAMGRYRGYWTKFLDFDHPFLQQCNLQV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2078 583 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 296 573 IPR029044 -
Tpr1g2078 583 Coils Coil 174 194 - -
Tpr1g2078 583 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 5 582 IPR029993 GO:0047262
Tpr1g2078 583 Coils Coil 225 245 - -
Tpr1g2078 583 SUPERFAMILY Nucleotide-diphospho-sugar transferases 294 580 IPR029044 -
Tpr1g2078 583 MobiDBLite consensus disorder prediction 81 109 - -
Tpr1g2078 583 Pfam Glycosyl transferase family 8 263 557 IPR002495 GO:0016757
Tpr1g2078 583 PANTHER HEXOSYLTRANSFERASE 5 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2078 Tpr-Chr1 21634257 21640487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2078 1 583 Glycosyltransferase AT1G06780 44.517 3.17e-178 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2078 K13648 - gmx:100819255 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2078 1 21634257 21640487 Tpr1g2078 1 21634257 21640487 ECH
Tpr6g3488 6 37682340 37689898 Tpr1g2078 1 21634257 21640487 PCT