Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2064 ATGGATGCAAAAGTGATTACACACAACATGAGTCTATCACCAACTTTAGCTCAGTGGAGAAGCCTAAGACTTAAACCAAAACACACTTTTGTAGTTGGAGTTTTTGCAAGGCCTTCAGATAACATTACTGAAGAAACATTAAGAAAAACTACTGTATACAATGATAATTGGTTTGATAAATTAGCTATAAATCATTTATCAAAAAGTGTTCAAGCAGCAACAGGCATAAGTAACAATAAGAGTGGTTTTGATAGCCTTGTGGAAGCAGCTACTGTGGCTTCACAGAAATTTAATACTATTCAACAACAAGAAATTATTCTAGATGCACTTGACAGAGCCTTTCCAAAGCCAATACTTTCGGTGATAAGGAGAGTGATGCCACCTTCTAAAATAGCAAGGGAATATTTTGCCGTCTTCACCACTTTGTTCTGTGCTTGGTTACTCGGTCCCTGTGAGGTGAGAGAATCGGAAGTCAATGGGAAAAGAGAAAAAAATGTCGTCCACATAAAAAAATGCAGAGTTTTAGAAGAAACAAATTGTGTTGGGATATGTGCCAATCTCTGCAAAATGCCATCTCAAATATTCATAAAGGACTCTTTTGGTATGCCACTCAATATGGTTCCAAATTTTGATGACATGAGTTGTGAGATGATATTTGGCCAGGAACCCCCATCATCAACCGATGATCCAGCACTCAAACAACCCTGCTATAAACTATGCAAGGCAAAGAAAAACCATGGAACGAAATGTCTTACCTAA 759 0.3755 MDAKVITHNMSLSPTLAQWRSLRLKPKHTFVVGVFARPSDNITEETLRKTTVYNDNWFDKLAINHLSKSVQAATGISNNKSGFDSLVEAATVASQKFNTIQQQEIILDALDRAFPKPILSVIRRVMPPSKIAREYFAVFTTLFCAWLLGPCEVRESEVNGKREKNVVHIKKCRVLEETNCVGICANLCKMPSQIFIKDSFGMPLNMVPNFDDMSCEMIFGQEPPSSTDDPALKQPCYKLCKAKKNHGTKCLT* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2064 252 Pfam Beta-carotene isomerase D27-like, C-terminal 146 227 IPR025114 GO:0005506
Tpr1g2064 252 PANTHER BETA-CAROTENE ISOMERASE D27 23 248 IPR038938 -
Tpr1g2064 252 PANTHER BETA-CAROTENE ISOMERASE D27, CHLOROPLASTIC 23 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2064 Tpr-Chr1 21442920 21454017 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2064 K17911 - qsu:112034272 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2064 1 21442920 21454017 Tpr1g2064 1 21442920 21454017 ECH
Tpr6g3502 6 37892373 37897368 Tpr1g2064 1 21442920 21454017 PCT