Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2014 ATGGATCTCACTCAAGCCACACTTGAGATCTTCTCCAAACTTGAACACAAATGGCTTTCTCATTGCAAAGACACCACCAAAACTCGCATTCTCAGCATTGATGGCGGAGGAACCACCCCCATTGTAGCCGGTGCTTCATTAATCCATCTCGAGGATCAGATCCGTCTCCAGACCTCCGATCTCCATGCTCAGGTATCAGATTTCTTCGACATTGTCGCTGGTACCGGCATTGGCGCTATTCTTGCTGCAATGATAACTGCTGCAGATTCATTAGGTAGGCCTCTGTATACTGCAAGAGAAGCCGTCCGTATCATCACTGAGAGAAACTCTGAACTGTACAAGCACAAATCCGCCGGAGTTTTTCGCCGTCGCCGGAGATTCTCTTCGAAGAACATGGATAACGTGTTGAAGCAAGTGTTCCTTAGAAAAGAGGATCAAAAGTTGTTGACCTTGAAGGACACGTGTAAACCGTTGCTTATACCTTGCTTTGACCTCAAGAGTTCGGCTCCATTCGTTTTTTCACGAGCCGATGCGTTAGAATCTCCGAGTTTCAACTTCGAACTCTGGAAAGTGTGCCGCGCCACGTCAGCAACACCGAGCCATTTTAAGCCGTTTAACTTCACATCCGTCGACGGAAAAACCTCCTGCTCCGCCGTAGACGGCGGTTTAGTCATGAACAATCCAACGGCTGCTGCAGTGACGCATGTTCTCCATAACAAGCGCGATTTTCCAACGGTAAACGGCGTGGAGGATCTTTTGGTACTTTCATTGGGAAACGGATCGTCGAACTCGAAGACATGCGAGAACCGCACGTGCTCAACGCCGTCGGTGGTTGACATTGTTCTCGACGGTGTTTCCGAGACTATTGACCAAATGCTTGGAAACGCTTTCTGTTGGAATCGTACGGATTACGTCAGAATTCAGGCGTTTGGTTTGGGAAGCGAAGGAGGGACGGAGGAGGAGGAGGTGCTGAATGAAAGAGGATTGGAGTCGTTACCGTTTGGCGGGAAGCGGTTAATGACGGAGACTAACGGAAACAGAATTGATAGCTTTGTCCAACGTCTTGTTGCTACCGGAAAACCCAGCCCACCGTTCAGTCCTTGCAAGGATTCAACCGTTACTTCTCTTGCTAACGGACGCTAG 1143 0.4917 MDLTQATLEIFSKLEHKWLSHCKDTTKTRILSIDGGGTTPIVAGASLIHLEDQIRLQTSDLHAQVSDFFDIVAGTGIGAILAAMITAADSLGRPLYTAREAVRIITERNSELYKHKSAGVFRRRRRFSSKNMDNVLKQVFLRKEDQKLLTLKDTCKPLLIPCFDLKSSAPFVFSRADALESPSFNFELWKVCRATSATPSHFKPFNFTSVDGKTSCSAVDGGLVMNNPTAAAVTHVLHNKRDFPTVNGVEDLLVLSLGNGSSNSKTCENRTCSTPSVVDIVLDGVSETIDQMLGNAFCWNRTDYVRIQAFGLGSEGGTEEEEVLNERGLESLPFGGKRLMTETNGNRIDSFVQRLVATGKPSPPFSPCKDSTVTSLANGR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2014 380 Gene3D Cytosolic phospholipase A2 catalytic domain 16 361 - -
Tpr1g2014 380 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 233 IPR002641 GO:0006629
Tpr1g2014 380 CDD Pat17_PNPLA8_PNPLA9_like 30 309 - -
Tpr1g2014 380 Pfam Patatin-like phospholipase 31 232 IPR002641 GO:0006629
Tpr1g2014 380 MobiDBLite consensus disorder prediction 365 380 - -
Tpr1g2014 380 PANTHER INACTIVE PATATIN-LIKE PROTEIN 9-RELATED 1 380 - -
Tpr1g2014 380 MobiDBLite consensus disorder prediction 361 380 - -
Tpr1g2014 380 PANTHER PATATIN-LIKE PROTEIN 6 1 380 - -
Tpr1g2014 380 SUPERFAMILY FabD/lysophospholipase-like 27 310 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2014 Tpr-Chr1 20612531 20614220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2014 1 380 Acyl Lipid Metabolism Gene Families AT3G63200 70.207 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2014 - - gmx:100777557 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3555 6 38587377 38588867 Tpr1g2014 1 20612531 20614220 PCT