Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1994 ATGTTCTCCAAGAGAAAAATTCAAACTTCCTTCTGCAACTACCTCAACAACAATCTCAACCTTCATATTTACACAAGATCTATATCCAGTCTCAAAGTAGTATGGCGCAAGGACCCACTACTAGACCAAGCCATAGAACATGATAAACGCTTCAAGCAATGTGCCCGCGTCGTCAAAGAAGTTCTCAATGAACCAGGTCAAGTCATCCCTCTACGCTACCTCGAAAAACGCCGCGAAAGGATGCGACTCAAGGTTAAAGTTGAAACCTTTATGAATCAAAACCCTTTTTTATTCGATATCTATTACGATCGCATTAAACCCAAAACTGAACCCGTTAAATTTATCCGGGTCAGCGATCAGCTCCTTCAGTTTCTGGAGGAAGAGAAACAAATTTATAAGGAGAATGAACCGTTAATTGTTTCTAAGTTGTGTAAATTGTTGATGATGTCAAAGAATAAGGTTGTTAGTGCTGATAAATTGCTTCACGTGAAAAGGGAATTTGGTTTCCCTAATGATTTTTTGGTTGATTTGGTTCCTAGGTATCCAGAATATTTTAGGTTAACTGGTTTACCTGGGGAGGGAAAATCGTTTCTTGAATTGGTTAATTGGAACCCTGAGTTTGCAAAATCTGTTATTGAGAAAAGGGCTGAAGAGGAAAGTAGGCTTACTGGGATTAGGGTTAGGCCTAGTTTCAATGTAAAGCTTCCTCCGGGGTTTGTGTTGAAGAAGGAAATGAGGGAGTGGATTAGGGATTGGATGGAGCTTGATTATGTATCACCTTACGAGGATGTTTCACATTTGGAGCAAGCATCAAGAGAGATGGAGAAAAGGTCTGTTGGGGTGTTCCACGAATTGCTTTCTCTTTCGCTGTATAAGAGGGTTCCGGTGCCGATTCTTGGAAAGTTTTGCGAGGAATATAGGTTTTCGAATGCTTTTTCAAGCACTTTTACAAGGCATTCTGGTATATTCTATATGTCGTTGAAAGGTGGGATTGAAACTGCAATGCTGAGAGAAGCATATGAAGGGGATAAGTTGATTGACATTGATCCACTGCTTCAGATAAAAGAGAGATTTGCCGAGTTGCTTAAGGAGGGTTGGCGGCAAAGAGCGGAGCAGTTGAGGTTGAAACAAGAAAAAATTAAACAAGATATGGAACTTGTGGCCACAAGAGTTGCTGAATAA 1182 0.4044 MFSKRKIQTSFCNYLNNNLNLHIYTRSISSLKVVWRKDPLLDQAIEHDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFMNQNPFLFDIYYDRIKPKTEPVKFIRVSDQLLQFLEEEKQIYKENEPLIVSKLCKLLMMSKNKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVIEKRAEEESRLTGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCEEYRFSNAFSSTFTRHSGIFYMSLKGGIETAMLREAYEGDKLIDIDPLLQIKERFAELLKEGWRQRAEQLRLKQEKIKQDMELVATRVAE* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1994 393 Pfam Plant organelle RNA recognition domain 37 366 IPR021099 GO:0003723
Tpr1g1994 393 Coils Coil 363 383 - -
Tpr1g1994 393 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 17 388 - -
Tpr1g1994 393 Coils Coil 115 135 - -
Tpr1g1994 393 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 17 388 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1994 Tpr-Chr1 20446833 20450027 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1994 - - gmx:100778092 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0596 6 4875894 4878764 Tpr1g1994 1 20446833 20450027 PCT