Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1349 ATGGCCAAGGAAGCTTCTTTCAGCCTCTTGATTCTCTCTTCTCTCTTAATTTCATGTTCTGGAGTTTTGGTAGGTTTTTCCTATCATGAGAGAGGAGACACATGGAGTAAAGTTTCTTCGTCTCAGATTCGAGTTTTCGTCACAGATCATAGGATTTTGAGCACTCTTACCAACTCAAATGTGTTAGTTGATCTTTACTTAAACAAAAGCCAAGTTGAAAATTTCACTACTTCAAAACATTCAGCAATTTCTGAGCTAAAAGTTCAGCTTATGAACTTTCTTCCACATTTAAACATCAAAAGCATCATTGCTAGCTGTGGAAGTGAGTGCTTAGTCCAAAATAAGATGCATATGATTATGCATGCTCTTAAATCAATTCATTCAATTCTCAGAGATCTTCACATAGGTAACGAAGTAAAAGTCTCGGTCGCATTTCCATTTCAATTCTTAAGGAAGTTGAGTATATCACAAGAACACAAACTTTGTAGGCTACTTTCATTTATAAAGGAAACAAAATCGTTTGTGACGATAGAAGACAGCATTGATGGGGAATTAAGCATGGGAGAACATTTTGTTCAAACTATTACCGAACGCGCTTCTCTTGCTGCTTCTGTTCTTCCTTGCAATGATGTTCCTGTGGTGCTAACAATCAAGAGTTCAGTTTTACCAAGTTCAATAGAAGTAGCTCAATTTAGTAAAAGGGTATCCAAATATTTAGAAGCAAGAAGTCCTATTGCAAAAAGATTATCTGCATTATATGTAGAACTTCGTGCAACAGAAGATTTTTCAATGAAAGAGCTTAAAAGGGAAGAGGAAGAAATATTTCATTTGTCTAGAAGAGAGATCTTAAGCAAATTTCACAGAAGAAAAACTTTAGATGGCACAAACAGTCCAACAAACTCAGTTTATCCGACAAATCCAACACCAGTTGTTGTGACACCCTCGGATACACCAACCATTATTGCAGTTCCTTCCACCACCAATCCTGTCACAATTTCCCCTACAAATCCAGCTGCAATGCCAGTAACAGTTCCTCCTACTACACCTGCTGTTCCTTTACCTCCAACAAATCCAACCAATTCACCGGCGGTTCCTGTCTTCAATCCAGCTACAACGCCTTCGACAGTTCCAGGTACACAACCAATAACCAACCCTGTGACATCTTATTATCCACCTCCATCAGGAAATGTTCCTGTTGTAAATCCTCAACAGCCACCTCCTTCAAGCGTAAATGCTCCTTCCATTCAAGGACAGAGTTGGTGTGTGGCGAAATCAGGTGCTCCACAAGCGTCCCTTCAATCGGCGTTGGATTATGCGTGTGGAATGGGTGGTGCTGACTGTTCTCAAATACAGCAGGGTGCTAGTTGTTACAGTCCAGTCACTTTGCAGAACCATGCTTCTTTTGCCTTCAACAGTTACTATCAAAAGAATCCATCTCCAACAAGTTGCAACTTTGGAGGCGCTGCCACCTTAGTTAACTCAAATCCAAGTTCTGGTTCTTGCATTTTCCCATCATCATCGTCCTCCTCATCATCGTCGTCAACATCATCCTCAACGCCGCCAACGATATCATCACCAACGCCACCTACACAATCAATTCCAACTTCAACACCGCCGCCAAGTCTAACAACACCTTCATCATCTATTCCAACAATAGCTCCCCCATCGATTCCAACAGCTCCACCAACATCTTCAGGATCAGGCACTTTCGGCTATGGTGCCCCACCTTCAGTGTTAAATTCATCAAGCGACCCAGCTTCAGGTACAATGCCTGATTTTGGGTCCGATAGCCCTCCTGTTGTAAACACAACGACGGCCTCGCACTCTCTAGCTCTGAAACCTGCTACTGGCTGCATAGTTCTGATGATTTCATTTGTCACTGCAAGACTCAGTATGCCATAG 1902 0.418 MAKEASFSLLILSSLLISCSGVLVGFSYHERGDTWSKVSSSQIRVFVTDHRILSTLTNSNVLVDLYLNKSQVENFTTSKHSAISELKVQLMNFLPHLNIKSIIASCGSECLVQNKMHMIMHALKSIHSILRDLHIGNEVKVSVAFPFQFLRKLSISQEHKLCRLLSFIKETKSFVTIEDSIDGELSMGEHFVQTITERASLAASVLPCNDVPVVLTIKSSVLPSSIEVAQFSKRVSKYLEARSPIAKRLSALYVELRATEDFSMKELKREEEEIFHLSRREILSKFHRRKTLDGTNSPTNSVYPTNPTPVVVTPSDTPTIIAVPSTTNPVTISPTNPAAMPVTVPPTTPAVPLPPTNPTNSPAVPVFNPATTPSTVPGTQPITNPVTSYYPPPSGNVPVVNPQQPPPSSVNAPSIQGQSWCVAKSGAPQASLQSALDYACGMGGADCSQIQQGASCYSPVTLQNHASFAFNSYYQKNPSPTSCNFGGAATLVNSNPSSGSCIFPSSSSSSSSSSTSSSTPPTISSPTPPTQSIPTSTPPPSLTTPSSSIPTIAPPSIPTAPPTSSGSGTFGYGAPPSVLNSSSDPASGTMPDFGSDSPPVVNTTTASHSLALKPATGCIVLMISFVTARLSMP* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1349 633 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Tpr1g1349 633 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 134 597 - -
Tpr1g1349 633 Gene3D Glycosidases 25 179 - -
Tpr1g1349 633 Pfam X8 domain 420 490 IPR012946 -
Tpr1g1349 633 Gene3D - 414 520 - -
Tpr1g1349 633 MobiDBLite consensus disorder prediction 522 547 - -
Tpr1g1349 633 SMART X8_cls 419 503 IPR012946 -
Tpr1g1349 633 MobiDBLite consensus disorder prediction 509 547 - -
Tpr1g1349 633 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 134 597 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1349 Tpr-Chr1 12337016 12340297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1349 381 506 Glycoside Hydrolase AT2G05790 50.000 3.13e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1349 - - cam:101499863 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0365 6 2933825 2936843 Tpr1g1349 1 12337016 12340297 PCT