Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1260 ATGACAGGACTTGTCATGGTTACAAGAGGCGGTGGATGCGGTGGTGGAAGTAGCAAAAGGACACGAGCAACACGAGCAGCTGAAGAAGAAGAACAAGAACAACAAAATCAGCTTTCACTTGTAGCTTTACTTGTAGCAGCAATTAGAAAATCTATGGTAGCATGCAGAGTAGATAGACCAGATCATGAAGTCATCTCAACCGTTCATCAAATGGAGATCGGATGGCCAACTGATGTTCAGCATATTACTCATGTTACCTTTGACCGTTTTAATGGCTTTCTTGGTCTTCCTGTTGAGTTTGAAGTTGAGATCCCTGGTCGTGTTCCAAGTGCTAGTGTAAGTGTATTTGGAGTCTCAGCAGAATCTATGCAGTGTTCTTATGATACAAAGGGAAACAGTGTTCCGACTATTCTCATGCTAATGCAGGACCGTTTATATTCACAGGGAGGACTAAAGGCTGAAGGTATATTTCGCATAAACCCAGAAAATAGTAAAGAGGAGCATGTGAGGAACCAGTTGAATAGTGGTATTGTGCCTGATGACATTGATGTCCATTGCTTGGCGGGACTAATCAAAGCGTGGTTCCGAGAACTTCCTTCTGGGGTGCTAGATGGACTTTCCCCTGAACAAGTTCTTCAATGCAACACAGAAGAAGAATCTATTGACCTTGTGAAGCAGCTAAAGCCAACTGAGTCTGCCTTACTCAGCTGGGCTATTGATCTCATGGCTGATGTTGTTCAAGAGGAGGAGTATAACAAAATGAATGCAAGAAACATTGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCGGATCCTCTAACTGCTCTAATGCATGCGGTTCAAGTGATGAACTTGCTCAAGACATTGATAACGAAAACCCTTAGGGAACGTGAAGAAACAGCAACAGGTGGATATTCACCTATGTCCTTTCGCACATCATTTCGCCGGTCAGAGGATGAATACGACAGTCAGCGAGAAACAGAAACGGGTGGATATTCACCCATGTCCTTTCGCTCATCATATCGCCCGTCTGAGGATGAATATGAAAGTCAACGGGAAATGGACGCAAGCGGTGAATTGAGACAAACCAAATCAGAAAGTCAACGGGAAATGGATGCAAGCGGTGAATTGAGACAGACCAAATCAGAAAGTCAACGGGAAATGGATGCAAGCGGTGAATTGAGACAGACCAAATCAGATTTTGACGATCACACTCATTACAGAAATAGCAGTGAAGAGGAATTGGAGGCTGAATCTCTGAGTGAGATAGAAGAATGCTTCTTAAAAAAATTGGACGAGCACACCAAAGAATTCTCAGAAGAACCTAAAGATTATGTACAAGAAGAGTATGTGAGCTCCAAAAGTTGCTGTGACTATAGTGTCGTGGAACCTGCTGAATCAATTACTGATATCAAAATTGTGAAGTGCTGCTTGAGTTCCGACAAAGAAAACCTAAATGCTGACACAACGATTCCATTGCTAGGATGGATAGACACCGAAAATGTGGAGATGGTTGATAAGTTCACAGATTCTGTTTCGCCAGTGCCGCCGCTGCTTTCATCTAGCTAA 1572 0.43 MTGLVMVTRGGGCGGGSSKRTRATRAAEEEEQEQQNQLSLVALLVAAIRKSMVACRVDRPDHEVISTVHQMEIGWPTDVQHITHVTFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQCSYDTKGNSVPTILMLMQDRLYSQGGLKAEGIFRINPENSKEEHVRNQLNSGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESIDLVKQLKPTESALLSWAIDLMADVVQEEEYNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLITKTLREREETATGGYSPMSFRTSFRRSEDEYDSQRETETGGYSPMSFRSSYRPSEDEYESQREMDASGELRQTKSESQREMDASGELRQTKSESQREMDASGELRQTKSDFDDHTHYRNSSEEELEAESLSEIEECFLKKLDEHTKEFSEEPKDYVQEEYVSSKSCCDYSVVEPAESITDIKIVKCCLSSDKENLNADTTIPLLGWIDTENVEMVDKFTDSVSPVPPLLSSS* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1260 523 SUPERFAMILY GTPase activation domain, GAP 114 292 IPR008936 GO:0007165
Tpr1g1260 523 CDD RhoGAP 135 292 - -
Tpr1g1260 523 SMART RhoGAP_3 132 295 IPR000198 GO:0007165
Tpr1g1260 523 MobiDBLite consensus disorder prediction 11 31 - -
Tpr1g1260 523 CDD CRIB 71 111 - -
Tpr1g1260 523 Pfam RhoGAP domain 135 269 IPR000198 GO:0007165
Tpr1g1260 523 Gene3D CRIB domain 68 104 IPR036936 -
Tpr1g1260 523 MobiDBLite consensus disorder prediction 343 416 - -
Tpr1g1260 523 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 383 499 - -
Tpr1g1260 523 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 327 371 - -
Tpr1g1260 523 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 332 - -
Tpr1g1260 523 ProSiteProfiles Rho GTPase-activating proteins domain profile. 118 298 IPR000198 GO:0007165
Tpr1g1260 523 MobiDBLite consensus disorder prediction 298 420 - -
Tpr1g1260 523 Pfam P21-Rho-binding domain 72 101 IPR000095 -
Tpr1g1260 523 SMART PBD_5 73 107 IPR000095 -
Tpr1g1260 523 PANTHER MKIAA1688 PROTEIN 383 499 IPR044785 GO:0005096
Tpr1g1260 523 PANTHER MKIAA1688 PROTEIN 327 371 IPR044785 GO:0005096
Tpr1g1260 523 PANTHER MKIAA1688 PROTEIN 1 332 IPR044785 GO:0005096
Tpr1g1260 523 Gene3D Rho GTPase activation protein 105 297 IPR008936 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1260 Tpr-Chr1 11305949 11309378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1260 - - mtr:MTR_1g089500 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1260 1 11305949 11309378 Tpr1g1260 1 11305949 11309378 ECH
Tpr6g0586 6 4803759 4807027 Tpr1g1260 1 11305949 11309378 PCT