Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3713 ATGAGTGCGTCCAGGTTCATCAAGTGCGTCACTGTTGGCGATGGCGCTGTCGGCAAGACCTGCCTGTTGATTTCCTACACCAGCAATACGTTTCCCACGGACTATGTGCCAACTGTTTTTGACAATTTCAGTGCTAATGTTGTTGTTGATGGAAGCACTGTTAATCTTGGGTTATGGGATACTGCTGGTCAGGAGGATTATAATAGATTAAGGCCCTTGAGCTATCGAGGAGCAGATGTCTTCATACTTGCATTTTCTCTTATAAGCAAGGCCAGCTATGAAAATGTTGCAAAGAAGGTTATTTCCTTGAATGAAAAGAATCTGTGGATCCCTGAACTGAGGCATTATGCACCCGGCATTCCAATAATTCTAGTTGGGACGAAGTTAGATCTTCGGGATGATAAGCAGTTTCTTATGGACCATCCTGGTGCAGTGCCTATAACTACGGCGCAGGGAGAAGAACTGAGAAAACTGATAGGTGCTCCTGCCTACATTGAGTGTAGTTCAAAAACGCAGCAGAATGTGAAAGCTGTGTTTGACGCAGCAATCAAAGTGGTTCTTCAACCACCtaagcaaaagaaaaagaagagaaaggcgCAGAAGTCCTGTTCAATATTGTGA 621 0.4251 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVISLNEKNLWIPELRHYAPGIPIILVGTKLDLRDDKQFLMDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKAQKSCSIL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3713 206 SMART rab_sub_5 7 189 - -
Sto9g3713 206 PANTHER RHO FAMILY GTPASE 1 206 IPR003578 GO:0005525|GO:0007264
Sto9g3713 206 SMART ras_sub_4 4 189 - -
Sto9g3713 206 ProSiteProfiles small GTPase Rho family profile. 1 186 - -
Sto9g3713 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 187 IPR027417 -
Sto9g3713 206 CDD Rop_like 6 187 - -
Sto9g3713 206 Gene3D - 5 201 IPR027417 -
Sto9g3713 206 ProSiteProfiles small GTPase Ras family profile. 2 206 IPR001806 GO:0003924|GO:0005525
Sto9g3713 206 TIGRFAM small_GTP: small GTP-binding protein domain 7 180 IPR005225 GO:0005525
Sto9g3713 206 ProSiteProfiles small GTPase Rab1 family profile. 2 206 - -
Sto9g3713 206 SMART rho_sub_3 9 189 IPR001806 GO:0003924|GO:0005525
Sto9g3713 206 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 206 - -
Sto9g3713 206 Pfam Ras family 8 187 IPR001806 GO:0003924|GO:0005525
Sto9g3713 206 PRINTS Transforming protein P21 ras signature 7 28 - -
Sto9g3713 206 PRINTS Transforming protein P21 ras signature 30 46 - -
Sto9g3713 206 PRINTS Transforming protein P21 ras signature 47 69 - -
Sto9g3713 206 PRINTS Transforming protein P21 ras signature 118 131 - -
Sto9g3713 206 PRINTS Transforming protein P21 ras signature 164 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3713 Sto-Chr9 35433206 35436889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3713 7 189 EF-hand Containing Proteins AT5G27540 26.776 7.89e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3713 K04392 - zju:107420406 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3713 9 35433206 35436889 Sto4g0331 4 2574857 2576587 ECH
Sto9g3713 9 35433206 35436889 Sto9g3713 9 35433206 35436889 ECH