Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0331 ATGAGCACTTCCGCCTTTCCAAATGAATATCAGAGAACTCATTCTCATCAACCACCCTCGGATCCAAGAGCTTTCCAGGATCAGAGAGACCCAAACCGAAGCTATGTTCAACAGGGAAACCTTAATAATCAATTTGATCGTGTTCATAACATTCCACGTCAATATCCTAATCAGGGTCAGAATCCACAGAATGGGGAGTATCCTGATCAAGGGTGGCAATATACTCCACCAGGAAACCGTAATCAGTGGAATCCTACAAATCAGGTATATCCTCAACATCGAGGCCCTACTCAGGTGAACCCTCAGAACCCTAATTTTCAGCGAAACCCTAGCCCCAATCAATGGAATAATCAAAACCAGGGATACCCACAATCTGGAAGCCCCAACCAGTTTAACAGTAGGACTCAAGGAGGACAAACCACTGAAAGTCAAGCTCCTGTTTCTCCACCTCCTTCGATTATTGATTTAACACGATTGTGCCAAGAGGGAAAGATAAAAGAAGCAATTGAAGTGATGGACAAAGGGGTCAAAGCTGATGCAAATTGTTTTGATTCTCTCTTTGATTTATGTGGAAAATCAAAATCTCTCGAGGATGCAAAAAAGGTCCATGATTACTTTTTGCAGTCTACCTTTAGGAGTGATCTTAAATTGAATAACAAGGTACTTGAGATGTACGGGAAGTGCAAAAGTATGACTGATGCACGCAGAGTGTTTGATCACATGGCCACTAGAAATTTGGATTCCTGGCACCTGATGATATATGGGTATTCAAGTAATACCATGGGAGATGAGGGCTTGCAATTGTTTGAGCAGATGAAAGAGCAGGGCTTGGAACCTACCTCAGAGACTTTCTTAGCTATGTTATCAGCTTGTGCTAGTGCTGAAGCTGTGGAGGATGGCTACATACATTTTGAGTCCATGAAAAGTAAGCATGGAATTGAACCAGGGATGGAGCATTATATGGGGCTTCTAGATGTTCTTGGTCAACCTGGCTATCTTAAGGAAGCTGAGGAATATATTGAGACGTTGCCATTTGAGCCTACAGTGGCTGTTTGGGAGAGACTAAGAGATTATGCTCGGACACATGGAGAAATTGATCTTGAAGATTATGAAGAGGAGTTGATAGTGAGTGTTGACCCATCAAAGGCTGTTGCCAATAAGATACCTACCCCTCCTCCAAAGAAGCGTACTGCAATCAACATGCTTGATGGCAAGAACAGAATAATTGAGTATAAGAATCCTACACTTTACAAAGATGATGAAAAGTTAAAAGCCTTGAGTGGGATGAAAGAAGCAGGTTATGTTCCTGATACAAGATATGTTCTTCATGACATTGATCAAGAAGCAAAGGAGCAAGCATTACTCTACCACAGTGAGCGTCTAGCAATTGCCTATGGTCTTATTAGTACTCCACCAAGAACCCCTCTTAGAATCATTAAGAATCTTCGTGTATGTGGTGACTGTCATAATGCCATCAAGATCATGTCCAGGATTGTGGGGAGGGAGTTAATTGTCAGAGATAACAAGAGGTTTCATCATTTCAAGGATGGCAAATGCTCTTGTGGGGATTACTGGTGA 1578 0.4208 MSTSAFPNEYQRTHSHQPPSDPRAFQDQRDPNRSYVQQGNLNNQFDRVHNIPRQYPNQGQNPQNGEYPDQGWQYTPPGNRNQWNPTNQVYPQHRGPTQVNPQNPNFQRNPSPNQWNNQNQGYPQSGSPNQFNSRTQGGQTTESQAPVSPPPSIIDLTRLCQEGKIKEAIEVMDKGVKADANCFDSLFDLCGKSKSLEDAKKVHDYFLQSTFRSDLKLNNKVLEMYGKCKSMTDARRVFDHMATRNLDSWHLMIYGYSSNTMGDEGLQLFEQMKEQGLEPTSETFLAMLSACASAEAVEDGYIHFESMKSKHGIEPGMEHYMGLLDVLGQPGYLKEAEEYIETLPFEPTVAVWERLRDYARTHGEIDLEDYEEELIVSVDPSKAVANKIPTPPPKKRTAINMLDGKNRIIEYKNPTLYKDDEKLKALSGMKEAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0331 525 MobiDBLite consensus disorder prediction 1 152 - -
Sto4g0331 525 TIGRFAM PPR: pentatricopeptide repeat domain 248 280 IPR002885 -
Sto4g0331 525 Pfam PPR repeat family 248 292 IPR002885 -
Sto4g0331 525 Pfam DYW family of nucleic acid deaminases 433 525 IPR032867 GO:0008270
Sto4g0331 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 520 - -
Sto4g0331 525 MobiDBLite consensus disorder prediction 1 22 - -
Sto4g0331 525 MobiDBLite consensus disorder prediction 30 150 - -
Sto4g0331 525 Gene3D Tetratricopeptide repeat domain 154 310 IPR011990 GO:0005515
Sto4g0331 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Sto4g0331 525 PANTHER OS07G0578800 PROTEIN-RELATED 2 520 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0331 Sto-Chr4 2574857 2576587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0331 162 525 Glycoside Hydrolase AT3G49170 36.962 8.80e-77 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0331 - - gmx:100818823 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3713 9 35433206 35436889 Sto4g0331 4 2574857 2576587 ECH
Sto4g0331 4 2574857 2576587 Sto4g0331 4 2574857 2576587 ECH