Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3308 ATGTCTAAAGTCATCGGCTTTTCCGGAGGTGACGATTTTTGCCCTGGGGGATCAATATACACTAATCCCAAGGAATCCAGTCTCTTATTTGGAAACCATGTTGATATTTACTTTCCTCCTCGGAAGAGATCTCGCATCACTGCTCCATTTGTTATCAGTGGAGAATGGTTTGAGCAGAAGCCAAAGACATCTATTGAAAATTTGCCAGATGAATGCCTCTTTGAGATCTTTAGGAGGTTGCCTGTTGGCCAAGAGAGGAGTGCATGTGCTTGTGTCTCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTCTAAGGATGAAATCTGCAGCCACAAAATTACTGGAGATGAGATCAAGTTGAGTGAAAACGAGGTTGAAGATCCGGAATTTGGTGGTGATGGACACCTTTCCCGGAGCTTGGTAGGTAAGAAGGCAACAGACATTAGACTTGCTGCCATTTCCGTCGGTACTGCTTCTCGTGGAGGACTGGGAAAACTTTCAATCCATGGGAGCAATTCAGATCGTGCGGTGACGGATCTAGGTCTCAAGGCAGTTGCCCATGGATGTCCTTCTTTAAAAGGGCTTTCTCTATGGGATATTGCTACCATCGGTGATGAAGGCCTAATTGAAATTGCTAGTGGATGTCATCAGTTAGAGAAGCTTGACCTTTGTAAGTGCCCTGCAATTTCTGACAAGGCTTTAATTGCTGTTGCAAAGAACTGCCCAAATCTGACCGAGTTATCAATAGAGTCATGTCCTAAAATTGGTAATGAAGGCCTACAAGCTATTGGGCAGCTATGCTCCAATCTACGATCCATATCTATCAAGGACTGCATCAGTGTTGGCGATCAGGGAATTGCTAGCCTGTTGTCATCACGTTCTTGTGACCTGACGAAGGTGAAGCTCCAGGCACTGACTATCTCAGATCTTGCTCTAGCTGTTATTGGACATTATGGGAAGGCAATTACTGATCTAGTCCTAATTTCCCTCTCAAATGTCAGTGAGAGGGGGTTCTGGGTCATGGGTAATGGTCATGGATTGCAGAAGTTAAAGTCACTCACAATTGCGTCCTGCCAAGGAGTCACTGATACTGGACTTGAAGCTGTCGGAAAGGGCTGTCCAAATCTCAAGCACACCCACCTTCGTAAATGTGCATTTCTATCAGACAATGGATTGTTATCATTTGCAAAATCTGCTCTATCACTTGAGAGCCTACAATTGGAGGAGTGCCACAGGATCACCCAATTTGGGTTTTTTGGTGTTATTATCAACTGTGGTGCAAAATTGAAGGCTCTTGCTCTCATAAGCTGCTTTGGGATCAAAGATCTGAATATGCGGTTGCCTCAGGTGTCTCCTTGCAAGTCACTGCAGTCACTTACAATCCGTAACTGCCCTGGATTTGGTAATGCTACCTTGGCTGTAGTGGGAAAGTTGTGCCCTCAGCTGCAGCATGTTGAATTGAGTGGACTTGAGGGAGTTACAGATGCTGGGTTTATTCCATTTGTTGAATGCTCTGAAGCTGGTCTTGTTAAGGTTAATGTTAATGGTTGTGTAAATGTGACAGACAAAGTAGTTTTATCATTGGCCAATCTGCATGGTTGGACACTGGAGATGCTTAATCTTGATGGCTGTAAGATCAGTGATGCTAGCTTGATAGCAATTGCTGGAAATTGCCCCTTGCTCTCTGATCTTGATGTTTCCAAGTGCGAAATCACCGATGCCGGGATTGCAGCCCTGGCTAGTGGAGACCAGCTCAATTTGCAGATCCTTTCTCTATCAGGTTGTTCTTTGGTTTCAGACAAGAGCTTGTCTGCTTTGAGAAATTTGGGCCAGACCCTTCTGGGATTAAATATTCAAAACTGCAATGCAATCAGCAGCAGATCTGTTGACATGCTTGTGGAACTTCTCTGGAGGTGTGACATCCTCTTCTGA 1932 0.4477 MSKVIGFSGGDDFCPGGSIYTNPKESSLLFGNHVDIYFPPRKRSRITAPFVISGEWFEQKPKTSIENLPDECLFEIFRRLPVGQERSACACVSKRWLMLLSSISKDEICSHKITGDEIKLSENEVEDPEFGGDGHLSRSLVGKKATDIRLAAISVGTASRGGLGKLSIHGSNSDRAVTDLGLKAVAHGCPSLKGLSLWDIATIGDEGLIEIASGCHQLEKLDLCKCPAISDKALIAVAKNCPNLTELSIESCPKIGNEGLQAIGQLCSNLRSISIKDCISVGDQGIASLLSSRSCDLTKVKLQALTISDLALAVIGHYGKAITDLVLISLSNVSERGFWVMGNGHGLQKLKSLTIASCQGVTDTGLEAVGKGCPNLKHTHLRKCAFLSDNGLLSFAKSALSLESLQLEECHRITQFGFFGVIINCGAKLKALALISCFGIKDLNMRLPQVSPCKSLQSLTIRNCPGFGNATLAVVGKLCPQLQHVELSGLEGVTDAGFIPFVECSEAGLVKVNVNGCVNVTDKVVLSLANLHGWTLEMLNLDGCKISDASLIAIAGNCPLLSDLDVSKCEITDAGIAALASGDQLNLQILSLSGCSLVSDKSLSALRNLGQTLLGLNIQNCNAISSRSVDMLVELLWRCDILF 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3308 643 Gene3D Ribonuclease Inhibitor 143 238 IPR032675 -
Sto9g3308 643 PANTHER UNCHARACTERIZED 21 634 - -
Sto9g3308 643 SUPERFAMILY RNI-like 178 292 - -
Sto9g3308 643 SMART fbox_2 68 109 IPR001810 GO:0005515
Sto9g3308 643 SUPERFAMILY RNI-like 296 640 - -
Sto9g3308 643 Pfam F-box domain 66 105 IPR001810 GO:0005515
Sto9g3308 643 Gene3D - 58 109 - -
Sto9g3308 643 SUPERFAMILY F-box domain 61 102 IPR036047 GO:0005515
Sto9g3308 643 Gene3D Ribonuclease Inhibitor 449 642 IPR032675 -
Sto9g3308 643 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 21 634 - -
Sto9g3308 643 Gene3D Ribonuclease Inhibitor 239 448 IPR032675 -
Sto9g3308 643 Pfam Leucine Rich repeat 535 555 IPR001611 GO:0005515
Sto9g3308 643 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Sto9g3308 643 Pfam Leucine Rich repeat 558 580 IPR001611 GO:0005515
Sto9g3308 643 Pfam Leucine Rich repeat 348 369 IPR001611 GO:0005515
Sto9g3308 643 SMART LRR_CC_2 479 504 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 506 531 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 241 266 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 267 292 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 189 214 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 584 609 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 347 372 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 533 557 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 453 478 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 373 398 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 399 424 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 558 582 IPR006553 -
Sto9g3308 643 SMART LRR_CC_2 215 240 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3308 Sto-Chr9 33103695 33106298 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3308 K14515 - gmx:100819226 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0855 5 5725774 5728302 Sto9g3308 9 33103695 33106298 CCT
Sto9g3308 9 33103695 33106298 Sto9g3308 9 33103695 33106298 ECH