Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0855 ATGTCAAAGGTCCTCGGCTTTACTGGAGATGATTTTTGTCCTGGGGGGTCAATATACCCTAACCCCAAGGAACCAAGTCTCTTGTTGTCTCTTGGCCGTCATGTTGATGTTTACTTCCCACCTCAGAAGAGATCGCGCATCAGTACTCCTTTGAATGGAGATTGGATTGAGGCTGAGCAGAAGCAGCAAACATCTATTGATGTTTTGCCAGATGAGTGCCTCTTTGAGATCTTTAGAAGGTTGCCTGGAGGACAAGAGAGGAGTTCTTGTGCCTGTGTCTCCAAGCGCTGGCTTATGCTTTTAAGTAATATTTGCAAGGATGAAATCTGCAGTGACAAAAGCACCAGTGATGAAGAGGAATTTGGGGGTGATGGAGACCTCTCTCGTGACTTGGAAGGAAAGAAGGCTACAGATGTTAGGCTTGCAGCTATGGTTGTAGGGACTGCTTCTCGTGGTGGATTGGGAAAGCTTTCAATCCTTGGAAGCAATTCAGGTTGTGCGGTGACCAATCTTGGTCTCAAGTCAGTTGCCCATGGGTGCCCTTCCTTAAAGTCTCTTTCTCTCTGGAATGTAACAGCCATAGATGATGAAGGCCTAATTGAGATTGCTCGTGGATGTCCCAAGATAAAGAAGCTTGACCTTTTCAATTGTCCCACAATTTCTGacaaggctttgattgttgttgcaAAGAACTGCCCCAATCTGACTGAGTTATCAATTGAATCATGTCCTAGAATTGGTAATGAAGGTCTACAAGCTATCGGGCAGTATAGCTCCAATCTAAGATCTATATCAATTAAGGATTGTACCCGTGTTGGTGATCAAGGAATTGCTAGCCTGTTTTCTGCAGCCTCTTTGGTTCTGACAAAGGTTAATCTTGAGGCACTGACTATTTCTGATCTCTCTCTAGCTGTAATTGGACACTATGGCAAGGCTGTCACAGATCTTGTGCTTAAATGCCTCCCTAATGTTTCTGAGAAAGGGTTCTGGGTCATGGGTAATGGCCACGGGTTGCAGAAGCTAAAGTCACTCTCAATTGTATCCTGTCAAGGAGTGACAGATACTGGGCTTGATGCTGTGGGAAAGGGGTGTCCCAATCTCAAATACCTGTATCTACATAGAAGTGCATATCTATCAGACAATGGGCTGGCTTCGTTTGTCAAGTCTGCTTTATCACTTGAGAACCTACAATTGGAGGAGTGCCACAGGATCACCCAATTTGGGCTTTTTGGTGTCCTTTTCAACTGTGGTGCCACGTTGAGATCTCTTGCACTAGTAAGCTGCTTTGGGATTAAAGATCTGAATTTGGTATTGCCTCCTCTATCTCCTTGCCAGTCACTGCAGTCTTTATCAATTCGTAATTGTCCTGGATTTGGTGATGCAACCATGGATGTGCTTGGAAAGCTTTGCCCTCAGCTGCAGTATGTTGAATTAAGTGGGCTGAAGGGAGTGACTGAATCTGGGTTTCTCTCGTTGCTTTTGGGCTCTGAGGCTGGTTTGGTTAAAGTTAATCTTAGTGGTTGTACAAATTTGACAGATAAAGTGGTGTCCTCCATGGCAAATATGCGTGGTTTGACTCTAGAGGTGTTAAGCCTTGATGGTTGTGAAAAGATCACTGATGCTAGCTTGGTATCAATTGCGGAAAATTGCCCATTGCTTCGTGATCTTGATGTGTCCAAGTGTGCAATCTCAGACAAGGGGGTTTCTGCCCTGGAACAAGGGAACCTGTTCCATTTGCAGATCCTTTCTCTGTCAGGTTGTCCTTTGATTTCAAACAAGAGCCTGCCTGCTCTGAGAAATATGGGGGAGACCCTTTTGGGGTTAAATCTCCGGAACTGCAATGGAATCAGCAGCCGCTCAGTTGGGAAGCTTGTGGAACTTCTTTGGAGGTGTGATATCCTCTCTTAA 1908 0.446 MSKVLGFTGDDFCPGGSIYPNPKEPSLLLSLGRHVDVYFPPQKRSRISTPLNGDWIEAEQKQQTSIDVLPDECLFEIFRRLPGGQERSSCACVSKRWLMLLSNICKDEICSDKSTSDEEEFGGDGDLSRDLEGKKATDVRLAAMVVGTASRGGLGKLSILGSNSGCAVTNLGLKSVAHGCPSLKSLSLWNVTAIDDEGLIEIARGCPKIKKLDLFNCPTISDKALIVVAKNCPNLTELSIESCPRIGNEGLQAIGQYSSNLRSISIKDCTRVGDQGIASLFSAASLVLTKVNLEALTISDLSLAVIGHYGKAVTDLVLKCLPNVSEKGFWVMGNGHGLQKLKSLSIVSCQGVTDTGLDAVGKGCPNLKYLYLHRSAYLSDNGLASFVKSALSLENLQLEECHRITQFGLFGVLFNCGATLRSLALVSCFGIKDLNLVLPPLSPCQSLQSLSIRNCPGFGDATMDVLGKLCPQLQYVELSGLKGVTESGFLSLLLGSEAGLVKVNLSGCTNLTDKVVSSMANMRGLTLEVLSLDGCEKITDASLVSIAENCPLLRDLDVSKCAISDKGVSALEQGNLFHLQILSLSGCPLISNKSLPALRNMGETLLGLNLRNCNGISSRSVGKLVELLWRCDILS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0855 635 SUPERFAMILY RNI-like 164 341 - -
Sto5g0855 635 SUPERFAMILY F-box domain 61 103 IPR036047 GO:0005515
Sto5g0855 635 Gene3D - 58 114 - -
Sto5g0855 635 Gene3D Ribonuclease Inhibitor 230 436 IPR032675 -
Sto5g0855 635 Pfam Leucine Rich repeat 339 359 IPR001611 GO:0005515
Sto5g0855 635 Pfam Leucine Rich repeat 550 571 IPR001611 GO:0005515
Sto5g0855 635 Pfam Leucine Rich repeat 231 254 IPR001611 GO:0005515
Sto5g0855 635 Gene3D Ribonuclease Inhibitor 558 632 IPR032675 -
Sto5g0855 635 Gene3D Ribonuclease Inhibitor 437 495 IPR032675 -
Sto5g0855 635 Gene3D Ribonuclease Inhibitor 496 557 IPR032675 -
Sto5g0855 635 SMART fbox_2 69 110 IPR001810 GO:0005515
Sto5g0855 635 SUPERFAMILY RNI-like 324 631 - -
Sto5g0855 635 PANTHER UNCHARACTERIZED 16 625 - -
Sto5g0855 635 PANTHER EIN3-BINDING F-BOX PROTEIN 1 16 625 - -
Sto5g0855 635 Gene3D Ribonuclease Inhibitor 128 229 IPR032675 -
Sto5g0855 635 Pfam F-box-like 67 100 IPR001810 GO:0005515
Sto5g0855 635 SMART LRR_CC_2 258 283 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 602 627 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 206 231 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 338 363 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 550 574 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 232 257 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 470 495 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 364 389 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 524 549 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 180 205 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 497 522 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 390 415 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 444 469 IPR006553 -
Sto5g0855 635 SMART LRR_CC_2 576 601 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0855 Sto-Chr5 5725774 5728302 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0855 K14515 - gmx:100820247 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0855 5 5725774 5728302 Sto9g3308 9 33103695 33106298 CCT
Sto5g0855 5 5725774 5728302 Sto5g0855 5 5725774 5728302 ECH