Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2860 ATGTATCCCATGACTCTGACTGACTTGCAGCGAATTTTTGAGAAGCTGGACGTGAATGAGGATGGGTTGGTGAGCCTTGAGGAGCTAAACTGGCTGCTCGAGAAGATAGGTTTCCAGTTCAGCGAAGAGGAGTTGGAATGTCTTGTGGGAAAACAGAGCCTTGACTTGAACGATTTCTTGTTCTTTTACGAGTCCATATCGAAGCAGAATAaggatgatgTGGAGAGAGACCTGGTGGAGGCGTTCAAGGTGTTTGATTTGGATGGCGATGGGTTCATCACAAGCCAAGAGCTGGAGTGTGTGCTCAAGAGGCTTGGCTTGTGGGACGACAAGACTGGTAAGGATTGCAGAAGCATGATTTGTTTCTACGACACCAATTCAGATGGTCGTCTTGATTTTGAGGAGTTCAAGGGCATGATGCATCCAACTACCACTTCTTGA 441 0.4603 MYPMTLTDLQRIFEKLDVNEDGLVSLEELNWLLEKIGFQFSEEELECLVGKQSLDLNDFLFFYESISKQNKDDVERDLVEAFKVFDLDGDGFITSQELECVLKRLGLWDDKTGKDCRSMICFYDTNSDGRLDFEEFKGMMHPTTTS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2860 146 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Sto9g2860 146 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 7 140 - -
Sto9g2860 146 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 140 - -
Sto9g2860 146 ProSitePatterns EF-hand calcium-binding domain. 86 98 IPR018247 -
Sto9g2860 146 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Sto9g2860 146 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Sto9g2860 146 CDD EFh 77 141 IPR002048 GO:0005509
Sto9g2860 146 SMART efh_1 115 143 IPR002048 GO:0005509
Sto9g2860 146 SMART efh_1 8 36 IPR002048 GO:0005509
Sto9g2860 146 SMART efh_1 77 105 IPR002048 GO:0005509
Sto9g2860 146 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Sto9g2860 146 Pfam EF hand 9 29 IPR002048 GO:0005509
Sto9g2860 146 Gene3D - 3 143 - -
Sto9g2860 146 SUPERFAMILY EF-hand 8 141 IPR011992 -
Sto9g2860 146 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Sto9g2860 146 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2860 Sto-Chr9 30046109 30046585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2860 4 140 EF-hand Containing Proteins AT1G21550 47.619 4.77e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2860 K13448 - gmx:100500561 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0355 5 2141364 2145497 Sto9g2860 9 30046109 30046585 CCT
Sto9g2860 9 30046109 30046585 Sto9g2860 9 30046109 30046585 ECH