Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0355 ATGTTATCTGGGAATGAGTTGCAGAGGATATTTGAGAAGCTGGACAAGCATGGGGATGGTTTTGTGAGGGTGGACAATCTAATTACGGCGGTAGAGAAGATCATAGGTAATTTTGAGTTTGGAGAAGAGGAGATAGAGTGTCTAGTGGGGAAGAAGATACTTGACTTGAATGACTTCTTGTGCTTTTACGACTCCATATCATCATCCAAACAATGTAATAATTACAAGATGAgcgaagaagaaaatgaagaggACGTAGAGAAAGAGCTTGTGAAGGCGTTCGAGGTGTTTGATATAGATGGAGATGGATTCATAAGCAGCCATGAGCTGGAATGTGTGCTCAAGAAGCTTGATTTCTGGGACAAAAGTAGTGGTCACGATACCAGAACTATGATTTGTGCCTACGACACCAATTTTGATGGCCAGCTTGATTTCCAGGAATTTAAGAACATGATGTTGCTTACCGTGAATACTGATGGCTCTCACAAACCTGATACGGACTCAATTAGTTGTGGAGGGGTTATGAGAGATCACAATGGTAACTGGGTGAAAGGCTTTGCTAAAAAGCTTGGGAAAGGTGGAGTGCTTCAAGCCGAACTTTGGAGCATTCTTACTGGTTTACAGATCTTAAAAGACATGAATATGGACAAAGTTATCTTTGAGGTTGACTCGATGTTAGCTGTTCATCTAGTCCTCAATGATTGCAATCAGACCcaccctcttttttctttggtcCAAAGGATTAGAAGACTTATGGAAGATTTTTGGAATGTTAATTTGGTGCACACTTTCAGAGAGAGCAACCGGTTAGCCGACACCTTAGCCTCTCAAGCTCATTATCTTCCCTCAGGTTGCCACGTTTTTTATAGGATCCCTCAATTTTGTAGTTTAGTGTTTCATGATGACTATAGAATGCTGTATGTTCCTCGTGGGGCTAGTTTctag 945 0.3926 MLSGNELQRIFEKLDKHGDGFVRVDNLITAVEKIIGNFEFGEEEIECLVGKKILDLNDFLCFYDSISSSKQCNNYKMSEEENEEDVEKELVKAFEVFDIDGDGFISSHELECVLKKLDFWDKSSGHDTRTMICAYDTNFDGQLDFQEFKNMMLLTVNTDGSHKPDTDSISCGGVMRDHNGNWVKGFAKKLGKGGVLQAELWSILTGLQILKDMNMDKVIFEVDSMLAVHLVLNDCNQTHPLFSLVQRIRRLMEDFWNVNLVHTFRESNRLADTLASQAHYLPSGCHVFYRIPQFCSLVFHDDYRMLYVPRGASF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0355 314 Pfam EF-hand domain pair 88 152 IPR002048 GO:0005509
Sto5g0355 314 Gene3D - 158 279 IPR036397 GO:0003676
Sto5g0355 314 SUPERFAMILY EF-hand 6 154 IPR011992 -
Sto5g0355 314 ProSitePatterns EF-hand calcium-binding domain. 98 110 IPR018247 -
Sto5g0355 314 Gene3D - 3 157 - -
Sto5g0355 314 SMART efh_1 6 34 IPR002048 GO:0005509
Sto5g0355 314 SMART efh_1 127 155 IPR002048 GO:0005509
Sto5g0355 314 SMART efh_1 89 117 IPR002048 GO:0005509
Sto5g0355 314 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Sto5g0355 314 CDD RNase_H_like 156 275 IPR044730 -
Sto5g0355 314 ProSiteProfiles RNase H type-1 domain profile. 150 280 IPR002156 GO:0003676|GO:0004523
Sto5g0355 314 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 155 - -
Sto5g0355 314 CDD EFh 90 152 IPR002048 GO:0005509
Sto5g0355 314 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Sto5g0355 314 SUPERFAMILY Ribonuclease H-like 154 287 IPR012337 -
Sto5g0355 314 Pfam Reverse transcriptase-like 157 278 IPR002156 GO:0003676|GO:0004523
Sto5g0355 314 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 2 155 - -
Sto5g0355 314 ProSiteProfiles EF-hand calcium-binding domain profile. 123 158 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0355 Sto-Chr5 2141364 2145497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0355 2 153 EF-hand Containing Proteins AT1G21550 41.176 4.84e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0355 K13448 - jre:108983002 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0355 5 2141364 2145497 Sto9g2860 9 30046109 30046585 CCT
Sto5g0355 5 2141364 2145497 Sto5g0355 5 2141364 2145497 ECH