Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2823 ATGAAATTAGAGCTTAGCTCAACACGTGGCCTTGTACACGTCGCTTACCTTGTTCCGCACCGCCTCCGCACATTTGGTTACAGAAGCGAGAAACTGAGgaatcttcttcttggtgaagGGCAATTCTGGGGTCAACTTACAGCCTTAAAGCGAAATGGCGGTGGTGCTAGCGGAAATGGCAGAGGAGTGAAAATGGAAGCTGGGGTGATTACCGAATGGAAGGATATACCAGTGGAGCTTTTAATGCAAATTCTGTCCCTTGCAGGTGATCAGGCGGTGATCACAGCTTCTGGAGTCTGTCGTGGGTGGAGAGATGCTATTTGCTTCGCCCTTAACCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAATTTGGTCCTATCTCTTGCTCCTAAATTCACGAAATTACAAGTTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATAATGCTGTTGAGACCATTGCAAACTGCTGTCATGGCCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAGCTTACTGATAGGTCTCTGTATGCCTTAGCACATGGATGTTCTGATCTTACAAATCTGAACATCAGTGGGTGTTCAGCTTTTAGTGACATTGCTCTGGCTTACCTAGCCAGTTTCTGCAGAAAATTGAAAGCTTTAAATCTCTGTGGATGTGTTAGAGCTGCATCTGACACTGCATTACAGGCTATTGGACATTACTGCAATCAGTTGCAGTCTTTGAACCTTGGATGGTGTGAAAATGTTGGTGATGCTGGAGTAACGAGTTTAGCAACTGGGTGCCCTGACCTTAGAACACTTGACTTATGTGGTTGTGTCTGCATAACAGATGATAGTGTGGTTGCTTTGGCAAACGGTTGTCCTCATCTGAGGTCCCTTGGGCTGTACTATTGTCAAAACATCACAGACAGAGCAATGTATTCATTGGCCCACAGAAAAGTGAATAAGAGGATGTGGGGATCTGTGAAAGGcaaaaatgaagaagatgatggtctAAGGACTCTCAACATTAGCCAATGTACAGCACTCACACCCTCTGCTGTTCAAGCCGTGTGTGACTCATTCCCGGCACTTCACACCTGCTCCGGCAGGCATTCACTCATCATGAGTGGCTGTTTGAACTTGACTTCTGTACATTGTGCTTGTGCTGTGCATTCACATCGAGCCATCACCGCTTTTCCTTATCAAGCTCACTGA 1212 0.4431 MKLELSSTRGLVHVAYLVPHRLRTFGYRSEKLRNLLLGEGQFWGQLTALKRNGGGASGNGRGVKMEAGVITEWKDIPVELLMQILSLAGDQAVITASGVCRGWRDAICFALNRLSLSWCSKNMNNLVLSLAPKFTKLQVLILRQDKPQLEDNAVETIANCCHGLQILDLSKSFKLTDRSLYALAHGCSDLTNLNISGCSAFSDIALAYLASFCRKLKALNLCGCVRAASDTALQAIGHYCNQLQSLNLGWCENVGDAGVTSLATGCPDLRTLDLCGCVCITDDSVVALANGCPHLRSLGLYYCQNITDRAMYSLAHRKVNKRMWGSVKGKNEEDDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVHSHRAITAFPYQAH 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2823 403 PANTHER UNCHARACTERIZED 57 385 - -
Sto9g2823 403 SUPERFAMILY RNI-like 108 316 - -
Sto9g2823 403 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Sto9g2823 403 Pfam Leucine Rich repeat 266 289 IPR001611 GO:0005515
Sto9g2823 403 Pfam Leucine Rich repeat 292 315 IPR001611 GO:0005515
Sto9g2823 403 Pfam F-box-like 74 108 IPR001810 GO:0005515
Sto9g2823 403 SMART LRR_CC_2 266 291 IPR006553 -
Sto9g2823 403 SMART LRR_CC_2 337 359 IPR006553 -
Sto9g2823 403 SMART LRR_CC_2 187 212 IPR006553 -
Sto9g2823 403 SMART LRR_CC_2 240 265 IPR006553 -
Sto9g2823 403 SMART LRR_CC_2 134 160 IPR006553 -
Sto9g2823 403 SMART LRR_CC_2 213 239 IPR006553 -
Sto9g2823 403 SMART LRR_CC_2 108 133 IPR006553 -
Sto9g2823 403 SMART LRR_CC_2 292 317 IPR006553 -
Sto9g2823 403 SMART LRR_CC_2 161 186 IPR006553 -
Sto9g2823 403 Gene3D - 72 106 - -
Sto9g2823 403 Gene3D Ribonuclease Inhibitor 107 323 IPR032675 -
Sto9g2823 403 SUPERFAMILY F-box domain 67 108 IPR036047 GO:0005515
Sto9g2823 403 PANTHER F-BOX SKP2A-LIKE PROTEIN 57 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2823 Sto-Chr9 29794235 29797842 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2823 K03875 - gmx:100797840 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0337 5 2012266 2014079 Sto9g2823 9 29794235 29797842 CCT
Sto9g2823 9 29794235 29797842 Sto9g2823 9 29794235 29797842 ECH