Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2746 ATGGGCTGCAATTGTTCAAAGAAACATAAGCCTCCAGGTTATGAGGAACCCACTCTTCTTGCTGCTGAGACACCTTGTGAGTATCCAttttcttcagTTACTGTGAGTGAAGTAGAGGCCTTACATGAGCTGTATAAGAAGTTGAGCAATTCCATAGTTAAAGATGGCCTTATTCACAAGGAAGAATTCCAGCTGGCACTCTTCAGGAATGAAAACAAGAGAAATCTATTTGCAGACaggATCTTTGATTTATTTGATGTGAAGCGCAATGGAGTTATTGATTTTGGGGGATTTGTTCGTTCATTGGGCATTTTTCACCCAAATGCACCTACACAAGACAAAATCACATTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTGTATTGAACGAgatgagTTGAAGGAGATGGTGGTTGCACTTCTGCACGAGTCAGATCTTCTACTCTCAGATGATATTGTGGAAACCATTGTAGATAAGACATTTAGTGATGTTGATGCAAAAGGTGACGGAAGGATTGACCTAGACGAGTGGAAAGCCTTTGTGTCAAAACATCCATCTTTGATCAAGAACATGACCCTCCCCTATTTAAAGGATATAACCTTAgcatttccaagttttatggtaagaacacaagttgaagaCACAGAGATATGA 660 0.3697 MGCNCSKKHKPPGYEEPTLLAAETPCEYPFSSVTVSEVEALHELYKKLSNSIVKDGLIHKEEFQLALFRNENKRNLFADRIFDLFDVKRNGVIDFGGFVRSLGIFHPNAPTQDKITFAFRLYDLRQTGCIERDELKEMVVALLHESDLLLSDDIVETIVDKTFSDVDAKGDGRIDLDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFMVRTQVEDTEI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2746 219 Pfam EF-hand domain pair 113 183 IPR002048 GO:0005509
Sto9g2746 219 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
Sto9g2746 219 PANTHER CALCINEURIN B 1 219 IPR045198 GO:0005509|GO:0019722|GO:0019900
Sto9g2746 219 SUPERFAMILY EF-hand 30 207 IPR011992 -
Sto9g2746 219 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Sto9g2746 219 CDD EFh 114 184 IPR002048 GO:0005509
Sto9g2746 219 ProSiteProfiles EF-hand calcium-binding domain profile. 154 189 IPR002048 GO:0005509
Sto9g2746 219 Gene3D - 31 217 - -
Sto9g2746 219 PRINTS Recoverin family signature 81 102 - -
Sto9g2746 219 PRINTS Recoverin family signature 128 146 - -
Sto9g2746 219 PRINTS Recoverin family signature 174 194 - -
Sto9g2746 219 SMART efh_1 114 142 IPR002048 GO:0005509
Sto9g2746 219 SMART efh_1 158 186 IPR002048 GO:0005509
Sto9g2746 219 SMART efh_1 77 105 IPR002048 GO:0005509
Sto9g2746 219 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2746 Sto-Chr9 29270267 29271526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2746 33 219 EF-hand Containing Proteins AT5G24270 72.727 5.72e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2746 K06268 - gmx:100811649 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2746 9 29270267 29271526 Sto5g1277 5 8681966 8683936 ECH
Sto9g2746 9 29270267 29271526 Sto9g2746 9 29270267 29271526 ECH