Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1277 ATGGGTTGCTATAGTTCCAAGGAAGCTAAATTACCAGGTTACGAGGATCCCACTGTTCTTGCTGCCGAGACACCTTTTTCAGTGAGTGAGGTAGAGGCCTTATATGAGCTCTATAAGAAGTTGAGCAACTCAATCTTTCAAGATGGACTTATTCACAAGGAAGAATTCCAACTTGCACTCTTCAGGAATAGAAACAAGAGAAATCTGTTTGCAGACCGCATTTTTGATTTATTTGATCTCAAGCGCAATGGGGTTATTGAGTTTGGGGAATTTGTTCGATCATTGGGTGTTTTTCACCCAAATGCACCTGTAGAAGACAAAATTGCATTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTATATTGAACGAGAGGAGTTGAAAGAGATGGTATTGGCACTTCTACATGAGTCAGACCTTATACTGACAGATGATGTCATTGAAACCATAGTGGATAAGACTTTTAACGATGCTGATTCAAAAGGCGATGGAAGGATCGATCCAGATGAATGGAAAGAATTTGTGTCGAAACATCCTTCTTTGATTAAGAACATGACCCTACCATATCTGAAGGATATAACCTTAGCATTTCCGAGTTTTGTGGGAAGAACAGAAATAGAAGACTCAGAAGTATGA 639 0.3975 MGCYSSKEAKLPGYEDPTVLAAETPFSVSEVEALYELYKKLSNSIFQDGLIHKEEFQLALFRNRNKRNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPNAPVEDKIAFAFRLYDLRQTGYIEREELKEMVLALLHESDLILTDDVIETIVDKTFNDADSKGDGRIDPDEWKEFVSKHPSLIKNMTLPYLKDITLAFPSFVGRTEIEDSEV 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1277 212 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Sto5g1277 212 CDD EFh 107 177 IPR002048 GO:0005509
Sto5g1277 212 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Sto5g1277 212 Gene3D - 16 210 - -
Sto5g1277 212 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Sto5g1277 212 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 212 - -
Sto5g1277 212 Pfam EF hand 72 93 IPR002048 GO:0005509
Sto5g1277 212 SUPERFAMILY EF-hand 19 200 IPR011992 -
Sto5g1277 212 Pfam EF-hand domain pair 106 176 IPR002048 GO:0005509
Sto5g1277 212 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Sto5g1277 212 SMART efh_1 70 98 IPR002048 GO:0005509
Sto5g1277 212 SMART efh_1 107 135 IPR002048 GO:0005509
Sto5g1277 212 SMART efh_1 151 179 IPR002048 GO:0005509
Sto5g1277 212 PRINTS Recoverin family signature 74 95 - -
Sto5g1277 212 PRINTS Recoverin family signature 121 139 - -
Sto5g1277 212 PRINTS Recoverin family signature 167 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1277 Sto-Chr5 8681966 8683936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1277 24 212 EF-hand Containing Proteins AT5G24270 75.661 4.08e-104 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1277 K06268 - zju:107414799 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2746 9 29270267 29271526 Sto5g1277 5 8681966 8683936 ECH
Sto5g1277 5 8681966 8683936 Sto5g1277 5 8681966 8683936 ECH