Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2583 ATGGAGCCTCTCAATGCCAAAtcttcctccctcttctccttcattTGTCTTCTCTTGCTTGCTTCAGCAAACGCCAAACTTCATGAGCATGAGTTTGTTgTTCAAGCAACCCCAACTAAGAGGCTGTGCAGTACCCACAACGCTATCACGGTGAATGGTCAATACCCAGGCCCAACTTTGGAAGTCAACAATGGAGACACTTTGATCATCAAAGTCACCAACAAAGCCCAATACAACTTGACCATTCACTGGCATGGTGTGAGACAAATCAGGACTGGATGGGCCGATGGGCCTGAGTTTGTGACCCAGTGTCCCATTCGTCCCGGGGAAAGCTACACGTACCGTTTTACTATTCAAGGACAAGAAGGGACACTTTGGTGGCACGCGCATAGCTCGTGGCTTAGAGCCACTGTATATGGAGCTTTAATCATTCGTCCTAGAGAAGGAGAGGCCTACCCATTCCCTAAGCCAAAACGCGAGTCTGTGGTTCTTCTAGGGGAATGGTGGGATGCAAACCCCATTGACGTTGTGAGGGAGGCCACACGAACAGGAGCAGCTCCCAATGTGTCTGATGCCTACACCATCAATGGCCATCCGGGTGATCTTTACAAATGCTCTTCCCaagACACTGTGATTGTTCCAATAGACTCCGGGGAGACCAACCTCCTCCGTGTGATCAACGCTGCACTCAACCAACCCCTATTCTTCACCGTCGCCAACCACCAGCTGACGGTGGTGGGTGCCGACGCCTCCTACCTCAAGCCCTTCACCACCAAAGTCATCATGTTGGGACCCGGCCAAACCACCGACGTCTTGATCACCGGCGACCAGCCTCCCTCCCGCTACTACATGGCGGCGCGTGCTTACCAATCCGCCCAAAACGCCGGCTTCGACAACACCACCACCACGGCCATCCTCCAATACAAATCCGCCCCCTGTCCCGCCAAAGGAGCCTCCATCAAACCCGTCATGCCCCTACTCCCTGCCTACAACGACACCAACACAGTCACTGCCTTCAGCAGAAGCTTCCGAAGCCCAAGAAAAGTGGAGGTCCCCACAGAGATCGACGACAGCCTCTTCTACACATTGGGCCTGGGCCTCAACAATTGCCCCCCAAACTTCGGGCCCAGCCAATGCCAGGGGCCCAACGGCACCCGTTTCGCCGCCAGCATGAACAACGTCTCCTTCGTCCTCCCCAACAACATTTCCATCTTGCAAGCCCACCACCACGGCATTCCCGGAGTCTTCACCACCGACTTTCCGGCGAATCCGCCGGTGAAGTTCGACTACACCGGGAACGTGAGCCGATCGCTGTGGCAACCCATCCAGGGGACTAAAGCCTACAAGTTGAAGTTCGGATCGAGAGTGCAGGTTGTGTTACAGGACACAAGCATTGTGACACCGGAGAATCACCCAATTCATCTTCATGGGTATGATTTCTATATCGTAGCAGAGGGATTTGGGAATTTCGACCCGAAGAAAGATACATCGAAATTCAACCTGGTTGATCCACCTTTGAGGAACACAGTGGCAGTTCCTGTGAATGGATGGGCAGTGATCCGATTTGTTGCGGATAACCCAGgtgtgtggaTTATGCATTGTCACTTGGATGTTCACATCACATGGGGATTGGCCACGGTGTTCGTGGTAGAGAATGGATTTGGGGCATTGGAAGCCATAGAGTCTCCTCCAGAGGACCTGCCTCTCTGTTAG 1713 0.5225 MEPLNAKSSSLFSFICLLLLASANAKLHEHEFVVQATPTKRLCSTHNAITVNGQYPGPTLEVNNGDTLIIKVTNKAQYNLTIHWHGVRQIRTGWADGPEFVTQCPIRPGESYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIRPREGEAYPFPKPKRESVVLLGEWWDANPIDVVREATRTGAAPNVSDAYTINGHPGDLYKCSSQDTVIVPIDSGETNLLRVINAALNQPLFFTVANHQLTVVGADASYLKPFTTKVIMLGPGQTTDVLITGDQPPSRYYMAARAYQSAQNAGFDNTTTTAILQYKSAPCPAKGASIKPVMPLLPAYNDTNTVTAFSRSFRSPRKVEVPTEIDDSLFYTLGLGLNNCPPNFGPSQCQGPNGTRFAASMNNVSFVLPNNISILQAHHHGIPGVFTTDFPANPPVKFDYTGNVSRSLWQPIQGTKAYKLKFGSRVQVVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWIMHCHLDVHITWGLATVFVVENGFGALEAIESPPEDLPLC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2583 570 ProSitePatterns Multicopper oxidases signature 2. 533 544 IPR002355 GO:0005507
Sto9g2583 570 SUPERFAMILY Cupredoxins 23 173 IPR008972 -
Sto9g2583 570 Gene3D - 157 348 IPR008972 -
Sto9g2583 570 Pfam Multicopper oxidase 161 310 IPR001117 -
Sto9g2583 570 Pfam Multicopper oxidase 420 552 IPR011706 GO:0005507|GO:0016491
Sto9g2583 570 PANTHER LACCASE 13 570 - -
Sto9g2583 570 CDD CuRO_1_LCC_plant 30 146 IPR034288 GO:0005507
Sto9g2583 570 CDD CuRO_3_LCC_plant 415 553 IPR034289 GO:0005507
Sto9g2583 570 PANTHER MULTI-COPPER OXIDASE 13 570 IPR045087 -
Sto9g2583 570 TIGRFAM laccase: laccase 25 570 IPR017761 GO:0046274|GO:0048046|GO:0052716
Sto9g2583 570 Pfam Multicopper oxidase 34 148 IPR011707 GO:0005507
Sto9g2583 570 ProSitePatterns Multicopper oxidases signature 1. 528 548 IPR033138 -
Sto9g2583 570 CDD CuRO_2_LCC_plant 162 308 IPR034285 -
Sto9g2583 570 Gene3D - 377 570 IPR008972 -
Sto9g2583 570 SUPERFAMILY Cupredoxins 381 570 IPR008972 -
Sto9g2583 570 Gene3D - 29 156 IPR008972 -
Sto9g2583 570 SUPERFAMILY Cupredoxins 154 346 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2583 Sto-Chr9 28327987 28330441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2583 K05909 - gmx:100796956 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2583 9 28327987 28330441 Sto5g1472 5 10106759 10110935 ECH
Sto9g2583 9 28327987 28330441 Sto9g2583 9 28327987 28330441 ECH