Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2552 ATGACAGTGTCCTTTAGATATGAAATGAAGATCCAAGTCTCTGTTTTCCGGTCCTCCGTCAAAGGCATCATGGCGGCTGCGAATGCTCCGATCGCCATGAGAGAGGCCCTAACTTTGCCAAGCATTGGCATCAATCCACAATTCATCACTTTTACCCATGTGACAATGGAATCCgataagtatatatgtgttCGAGAAACAGCTCCCCAGAACAGTGTGGTTATAATTGATATGAACATGCCAATGCAACCTTTAAGGAGGCCTATCACTGCAGATTCTGCTCTTATGAATCCGAATTCGAGAATCCTTGCTCTGAAGGGAGACTCTGAACCCGTAAAGATGTTTGAAAGAACTGCGAATTTGGCAAACAATCAGATAATTAATTATCGGTGTGACCCTACTGAAAAATGGTTGGTCCTGATTGGTATTGCTCCCGGGTCCCCTGAGAGGCCACAATTGGTTAAAGGGAACATGCAACTTTTTTCTGTGGATCAGCAGCGCAGTCAAGCTCTTGAAGCACATGCTGCATCATTTGCTCAATTCAAAGTTCCTGGGAATGAAAATCCTTCTGTACTGATTTCTTTTGCCACGAAGACACTAAATGCTGGTCAAATTACATCCAAGTTGCATGTTATTGAGCTTGGTGCACAGCCAGGAAAGCCATCATTTGTAAAGAAACAGGCAGATCTTTTCTTCCCACCGGATTTTGCAGATGACTTTCCAGTTGCAATGCAGATATCCCACAAATACAGTTTGATTTTTGTGATCACCAAGCTTGGCCTACTTTTTGTCTATGATTTGGAGACAGCTACTGCAGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACAGCAGAAGCTTCATCAGTAGGAGGTTTTTATGCTGTCAACAGGAGAGGCCAGGTGTTATTGGCTACTATTAATGAACAAACCATCGTGAATTTTGTCAGTGGTCAATTAAACAATTTGGAGCTAGCAGTTAATCTTGCCAAAAGAGGAAATCTTCCTGGGGCTGAGAAGCTGGTTGTGGAACGTTTCCATGAACTCTTTGCCCAAACAAAGTATAAAGAAGCTGCTGAGCTTGCTGCTGAATCTCCACAAGGAATTCTTCGTACACCTGATACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTGTTGCAGTATTTTGGAACACTTTTAACAAGAGGAAAGTTGAACGCCTTTGAATCATTAGAATTGTCACGGCTTGTTGTGAAccagaataaaaaaaatctgttgGAGAATTGGTTGGCTGAGGACAAGCTGGAATGCAGTGAGGAGCTTGGCGATCTTGTTAAGACTGTAGACAATGATCTTGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAAATCCTGATATACTCAAAGCAGGTTGGGTACACGCCTGACTACCTCTTCCTTTTGCAAACTATCCTCCGGACAGATCCTCAGGGTGCTGTAAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGAGGAATTTGATCCGTGAGGCAACAGCTTTTCTCTTAGATGTTTTGAAGCCAAATCTACCAGAACATGGGTACCTTCAAACAAAGGTGTTGGAGATAAATCTGGTAACTTTTCCCAATGTAGCTGATGCAATCCTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTATGTGAAAAGGCTGGTCTTTACGTGCGAGCCTTGCAACATTACACAGAGTTGCCAGATATAAAACGAGTGATTGTGAATACACATGCAATAGAGCCACAGTCACTTGTAGAGTTTTTCGGTACTCTCTCACGAGAGTGGGCTTTAGAGTGCATGAAAGACCTATTGGTGGTCAATCTCAGAGGCAACCTTCAGATAATTGTGCAGGTTGCAAAAGAATATTGTGAACAATTGGGCATTGATGCCTGCATAAAGATTTTTGAGCAGTTTAGGTCATATGAAGGACTGTACTTTTTCCTTGGATCCTTTTTGAGCTCcagTGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCTGCAAAGACTGGACAAATTAAAGAGGTTGAGCGTGTGACTAGAGAATCAAATTTCTATGATGCTGAGAAAACGAAGAACTTCCTTATGGAAGCTAAGCTTCCAGATGCACGGCCTTTAATAAATGTTTGTGATCGCTTTGGATTTGTTCCAGATCTAACACACTATCTATATACAAACAACATGCTTCGTTACATTGAAGGATATGTTCAGAAGGTGAACCCAGGAAATGCTCCTTTAGTTGTTGGACAGCTGCTAGATGACGAGTGTCCAGAAGATTTTATTAAAGGCTTAATTCTTTCTGTTCGTTCTTTACTGCCAGTGGAGCCCCTTGTGGAGGAATGCGAGAAGAGGAATCGGCTTCGTTTGCTCACCCAATTCTTGGAACATCTTGTGAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGATAGTAACAACAATCCAGAACATTTTCTTACTACCAACCCATACTATGATTCTCGAGTTGTGGGCAAGTATTGTGAGAAGCGTGATCCCACCTTGGCAGTTGTAGCCTACAGGAGAGGGCAATGTGATGATGAACTTATCAATGTCACAAATAAAAATTCTTTGTTCAAACTGCAAgcaagATATGTGGTTGAGAGGATGGATGCTGATCTTTGGGAAAAAGTTCTCAACCCCGATAATGCCTACAGAAGGCAACTTATTGATCAGGTCGTATCTACTGCTTTGCCTGAAAGCAAAAGCCCTGAACAAGTTTCTGCAGCTGTTAAGGCTTTCATGACTGCTGATTTGCCTCATGAATTGATTGAACTTCTTGAGAAGATTGTGCTTCAGAATTCTGCTTTCAGTGGGAACTTTAATTTGCAGAATCTGCTTATTTTGACAGCCATAAAAGCTGATCCATCCAGAGTCATGGATTATATTAATAGACTGGATAACTTTGATGGGCCTGCAGTTGGAGAAATGGCTGTAGAAGCTCAATTATATGAGGAAGCATTTGCAATTTTCAAGAAGTTTAACTTGAATGTTCAAGCGGTCAATGTATTGTTAGACAATATTCGTAGCATTGATAGAGCTGTGGAGTTCGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTAGCCAAGGCTCAACTCAGGGAAGGGTTAGTTAGTGATGCAATTGAGTCGTTTATTCGGGCAGATGATGCCACACAATTTTTGGATGTTATCCATGCTGCTGAAGATGCCAATGTTTACCATGACTTGGTGAGGTACTTGCTGATGGTAAGGCAGAAGGCAAAAGAACCCAAGGTGGACAGTGAGCTCATTTATGCTTATGCAAAGATTGATAGGCTCAGTGACATTGAGGAATTTATTCTTATGCCAAATGTGGCTAATCTTCAAAATGTTGGTGACCGGTTGTATGACGAGGCACTTTATGAGGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTGGCAATCACACTCGTGAAGTTGAAACAGTTCCAGGGTGCTGTTGATGCAGCAAGGAAAGCCAACAGCTCGAAAACATGGAAGGAAGTTTGCTTTGCATGTGTTGACGCAGAGGAGTTCCGTTTGGCTCAGATTTGTGGGCTCAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGCGAGTATTACCAAAATAGAGGTTGTTTCAATGAGCTAATATCTCTCATGGAGAGTGGTTTAGGATTAGAACGGGCACATATGGGTATCTTCACCGAGTTAGGAGTTCTGTATGCTAGATATCGTCCTGAAAAGCTTATGGAGCATATCAAACTATTCTCAACTCGCCTCAATATTCCAAAACTCATTAGAGCTTGTGATGAACAGCAGCATTGGAAAGAACTGACCTATTTGTACATTCAATATGATGAGTTTGACAATGCAGCAACTACAATCATGAACCATTCTCCAGAAGCGTGGGATCACATGCAATTCAAAGATGTCGTTGTCAAAGTTGCCAATGTGGAATTGTATTACAAGGCTGTTCACTTCTATCTGCAGGAGCATCCTGATCTTATCAATGATGTTCTGAATGTCCTTGCACTCCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGGCTGGTCATCTCCGTCTTGTGAAGCCATACATGGTTGCCGTTCAGAGTAACAATGTCTCTGCTGTTAATGAGGCATTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGTGAATCAATTGATTTGCATGATAACTTTGATCAAATAGGCCTTGCACAGAAGGCGAGCCTCATTTTTCATCGTATAGAGAAACATGAGCTTCTTGAGATGAGACGGGTGGCTGCTTATATTTACAAGAAGGCAGGCAGGTGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAAACAGCCTCCCAATCTGGTGACCGTGAACTTGCTGAGGAGTTGCTTGTTTATTTCATTGAGCAGGGAAAGAAGGAATGCTTTGCCTCATGCCTCtttgtttgttatgatttaaTCCGCGCGGACATAGCACTTGAACTTGCCTGGATGAACAATATGATCGACTTTGCCTTTCCCTATCTCTTACAGGTAGCCCCTTTCCCTGTCAATGCCCCAAACTCCTGCTGTGTGTTATCCCCTTTTGCTCTTGATCGAACTTCAGTTTCTATAGAAGCAAATCTAgtattatttgttttgtttccaACCTTTTGTGGGCTAAAATGCACTCTTTTGTCCATATCTTTTCCCCCCCCTATAGTTCGGCAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGACAAAATAGAGGCACAAATCGAAGTGAAGGctaaagaaaaggaagagaaggacgTTATTGCACAACAGAACATGTATGCTCAACTGTTACCTCTTGCTTTGCCTGCACCACCAATGCCAGGAATGGGAGGAGGCTTTGCTCCTCCCCCTCCAATGGGTGGGATGGGGATGCCTCCAATGCCTCCCTTTGGCATGCCGCCCATGGGCAGCAGCTACTGA 5205 0.4184 MTVSFRYEMKIQVSVFRSSVKGIMAAANAPIAMREALTLPSIGINPQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKGDSEPVKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKTLNAGQITSKLHVIELGAQPGKPSFVKKQADLFFPPDFADDFPVAMQISHKYSLIFVITKLGLLFVYDLETATAVYRNRISPDPIFLTAEASSVGGFYAVNRRGQVLLATINEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLVVNLRGNLQIIVQVAKEYCEQLGIDACIKIFEQFRSYEGLYFFLGSFLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLNPDNAYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIHAAEDANVYHDLVRYLLMVRQKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKASLIFHRIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRADIALELAWMNNMIDFAFPYLLQVAPFPVNAPNSCCVLSPFALDRTSVSIEANLVLFVLFPTFCGLKCTLLSISFPPPIVRQFIREYTGKVDELVKDKIEAQIEVKAKEKEEKDVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMGGMGMPPMPPFGMPPMGSSY 1734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2552 1734 Pfam Region in Clathrin and VPS 524 657 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 Pfam Region in Clathrin and VPS 1407 1553 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 Pfam Region in Clathrin and VPS 960 1098 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 Pfam Region in Clathrin and VPS 1113 1248 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 Pfam Region in Clathrin and VPS 817 950 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 Pfam Region in Clathrin and VPS 1259 1398 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 Pfam Region in Clathrin and VPS 668 807 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 PANTHER CLATHRIN HEAVY CHAIN 1639 1733 - -
Sto9g2552 1734 PANTHER CLATHRIN HEAVY CHAIN 106 1590 - -
Sto9g2552 1734 PANTHER CLATHRIN HEAVY CHAIN 24 106 - -
Sto9g2552 1734 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1404 1554 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 SMART CLH_2 814 953 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 SMART CLH_2 518 660 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 SMART CLH_2 667 809 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 SMART CLH_2 1255 1401 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 SMART CLH_2 1109 1250 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 SMART CLH_2 960 1105 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 SMART CLH_2 1404 1570 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 518 664 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1109 1250 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 SUPERFAMILY Clathrin heavy-chain terminal domain 28 310 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Sto9g2552 1734 SUPERFAMILY ARM repeat 1019 1162 IPR016024 -
Sto9g2552 1734 Pfam Clathrin propeller repeat 43 79 IPR022365 -
Sto9g2552 1734 Pfam Clathrin propeller repeat 121 164 IPR022365 -
Sto9g2552 1734 Gene3D - 21 107 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Sto9g2552 1734 Gene3D - 108 344 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Sto9g2552 1734 Gene3D - 1516 1593 - -
Sto9g2552 1734 SUPERFAMILY ARM repeat 424 760 IPR016024 -
Sto9g2552 1734 PIRSF CHC 105 1596 IPR016341 GO:0016192|GO:0032051|GO:0071439
Sto9g2552 1734 PIRSF CHC 26 109 IPR016341 GO:0016192|GO:0032051|GO:0071439
Sto9g2552 1734 PIRSF CHC 1637 1718 IPR016341 GO:0016192|GO:0032051|GO:0071439
Sto9g2552 1734 Gene3D Tetratricopeptide repeat domain 1019 1163 IPR011990 GO:0005515
Sto9g2552 1734 Gene3D Tetratricopeptide repeat domain 1164 1510 IPR011990 GO:0005515
Sto9g2552 1734 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 960 1105 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1255 1401 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 Coils Coil 1657 1677 - -
Sto9g2552 1734 SUPERFAMILY ARM repeat 868 1033 IPR016024 -
Sto9g2552 1734 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 814 953 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 SUPERFAMILY ARM repeat 1163 1505 IPR016024 -
Sto9g2552 1734 Coils Coil 1444 1464 - -
Sto9g2552 1734 SUPERFAMILY ARM repeat 312 467 IPR016024 -
Sto9g2552 1734 PANTHER CLATHRIN HEAVY CHAIN RELATED 1639 1733 - -
Sto9g2552 1734 PANTHER CLATHRIN HEAVY CHAIN RELATED 24 106 - -
Sto9g2552 1734 PANTHER CLATHRIN HEAVY CHAIN RELATED 106 1590 - -
Sto9g2552 1734 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 667 809 IPR000547 GO:0006886|GO:0016192
Sto9g2552 1734 Pfam Clathrin-H-link 336 401 - -
Sto9g2552 1734 Pfam Clathrin, heavy-chain linker 311 334 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2552 Sto-Chr9 28146826 28160421 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2552 K04646 - gmx:547986 2914.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2552 9 28146826 28160421 Sto5g1495 5 10305823 10310946 ECH
Sto9g2552 9 28146826 28160421 Sto9g2552 9 28146826 28160421 ECH