Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1495 TTGTTGCAGGCACTTGTAGAGTTTTTTGGTACTCTGTCTAAAGAATGGGCCTTAGAATGCATGAAAGATCTATTGATGGTCAATCTTAGAGGCAACCTGCAGATTATTGTGCAGGTTGCAAAAGAATATTGCGAACAAATGGGTGTTGACTCCTGCATAAAAATTTTTGAGCAGTTCAGGTCATATGAAGGACTCTACTTTTTCCTAGGATCATATTTGAGCTCCAGTGAGGATCCTGACATTCACTTCAAGTATATAGAGGCTGCTGCGAAGACCGGACAAATCAAAGAAGTGGAGCGTGTGACCAGAGAATCTAATTTCTATGATCCTGAGAAAACAAAGAACTTTCTAATGGAAGCCAAGCTTCCAGACGCACGACCTTTAATAAATGTTTGTGATCGTTTTGGATTTGTTCCAGATTTAACTCATTATCTATACACAAGCAACATGCTCCGGTACATTGAAGGATATGTTCAGAAGGTGAACCCAGGAAATGCTCCTCTAGTTGTTGGGCAGCTGCTTGATGATGAGTGTCCTGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCTTTACTGCCAGTGGAGCCGCTTGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGATTGCTCACCCAGTTCTTGGAGCATCTTGTGAGTGAAGGAAGCCAGGATGTACATGTCCACAACGCCCTGGGTAAAATTATCATTGATAGCAACAACAATCCAGAACATTTTCTAACCACCAATCCATACTATGATTCTCGAGTTGTGGGTAAATATTGTGAGAAACGTGATCCCACCTTAGCAGTTGTAGCTTACCGGCGAGGACAATGTGATGATGAACTTATCAATGTCACAAATAAAAATTCTTTGTTCAAACTGCAAGCAAGATATGTGGTTGAGAGGATGGATGCTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATGAGTATAGAAGACAACTTATTGATCAGGTTGTATCCACTGCTTTGCCTGAAAGCAAGAGTCCTGAACAAGTTTCTGCAGCTGTTAAGGCTTTCATGACAGCAGATTTGCCCCATGAATTGATTGAACTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGTGGAAACTTCAACTTGcaaaatcttcttattttgaccGCCATAAAGGCTGACCCGTCCAGAGTCATGGATTATATAAATAGACTGGATAACTTTGATGGGCCTGCAGTTGGAGAAATGGCTGTAGAAGCTCAATTATATGAGGAAGCATTTGCGATATTTAAGAAGTTCAACTTGAATGTTCAAGCAGTCAATGTTTTGTTAGATAATATTCGTAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGACGCTGTTTGGAGCCAGGTGGCCAAGGCTCAACTCCGGGAAGGGCTAATAAGTGATGCCATTGAGTCATTTATCCGAGCAGATGATGCCTCACAGTTTTTGGATGTCATCCGTGCTGCTGAAGATGCCAATGTTTACCATGATTTGGTAAGGTACTTGCTTATGGTAAGGCAAAAGGCTAAAGAACCCAAGGTGGACAGTGAGCTCATTTATGCATATGCAAAGATTGATAGGCTCAGTGATATTGAGGAGTTCATTCTTATGCCAAATGTGGCTAATCTTCAGAATGTTGGTGATCGATTGTATGATGAAGCCTTATATGAGGCCGCAAAAATCATATTTGCTTTTATATCTAACTGGGCCAAATTGGCTATCACACTGGTGAAGTTGAAACAATTCCAAGGTGCTGTTGATGCAGCAAGGAAAGCAAACAGTTCAAAAACATGGAAAGAAGTTTGCTTTGCTTGTGTTGATGCCGAGGAGTTCCGTCTTGCCCAAATATGTGGGCTCAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGCTAATTTCTCTCATGGAGAGTGGTTTGGGATTAGAACGGGCACATATGGGTATTTTCACCGAGTTAGGAGTTCTATATGCTAGATACCGTCCTGAGAAGCTTATGGAACATATCAAATTATTCTCAACCCGCCTCAATATTCCAAAACTGATCAGAGCTTGTGATGAGCAACAGCACTGGAAGGAATTGACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAATCATTCTCCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTCAAAGTTGCCAATGTCGAATTATATTACAAGGCTGTTCATTTCTATTTGCAAGAGCATCCTGATCTTATTAATGATGTTCTAAATGTCCTTGCCCTTCGGGTGGACCATGCACGTGTTGTGGACATAATGCGAAAGGCTGGTCACCTCCGTCTTGTGAAGCCATACATGGTTGCAGTTCAGAGCAACAATGTCTCTGCTGTAAATGAGGCCTTGAACGAGATATATGTTGAAGAGGAAGACTATGATAGGTTGCGTGAGTCAATTGATTTGCATGATAACTTCGATCAAATAGGCCTTGCACAGAAGATTGAGAAGCATGAGCTTCTTGAGATGAGGCGTGTTGCTGCTTATATTTACAAGAAGGCAGGCCGGTGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGTGACCGTGAGCTTGCTGAGGAGTTGCTTGTTTATTTCATTGAACAGGGAAAGAAGGAATGCTTTGCTTCATGCCTCTTTGTTTGTTATGACTTGATCCGGGCAGACATCGCTCTTGAACTTGCCTGGATGAACAATATGATTGATTTTGCCTTCCCGTATCTCTTACAGTTTATCCGTGAGTACACTGGTAAAGTTGATGAATTggtgaaggacaaaattgaagCACAAAACGAAGTGAAGGCtaaggagaaagaagaaaaggatgtgaTCGCACAACAGAACATGTACGCTCAGTTGTTACCTCTAGCTTTGCCTGCACCACCAATGCCGGGAATGGGAGGACCAGGTGTGGGAGGAGGTTTTGCTCCTCCACCTCCCATGGGTGGACTAGGGATGCCTCCAATGCCACCTTTCGGCATGCCACCCATGGGCAGTAGCTACTGA 3141 0.4152 LLQALVEFFGTLSKEWALECMKDLLMVNLRGNLQIIVQVAKEYCEQMGVDSCIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLNPDNEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLISDAIESFIRADDASQFLDVIRAAEDANVYHDLVRYLLMVRQKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRADIALELAWMNNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQNEVKAKEKEEKDVIAQQNMYAQLLPLALPAPPMPGMGGPGVGGGFAPPPPMGGLGMPPMPPFGMPPMGSSY 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1495 1046 SUPERFAMILY ARM repeat 4 133 IPR016024 -
Sto5g1495 1046 Coils Coil 817 837 - -
Sto5g1495 1046 Gene3D Tetratricopeptide repeat domain 397 536 IPR011990 GO:0005515
Sto5g1495 1046 Gene3D Tetratricopeptide repeat domain 537 876 IPR011990 GO:0005515
Sto5g1495 1046 Gene3D Tetratricopeptide repeat domain 242 396 IPR011990 GO:0005515
Sto5g1495 1046 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 482 623 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 40 182 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 SUPERFAMILY ARM repeat 392 535 IPR016024 -
Sto5g1495 1046 SMART CLH_2 40 182 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 SMART CLH_2 187 326 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 SMART CLH_2 628 774 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 SMART CLH_2 482 623 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 SMART CLH_2 777 936 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 SMART CLH_2 333 478 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 PANTHER CLATHRIN HEAVY CHAIN RELATED 3 1044 - -
Sto5g1495 1046 Coils Coil 957 991 - -
Sto5g1495 1046 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 333 478 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 Pfam Region in Clathrin and VPS 333 471 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 Pfam Region in Clathrin and VPS 190 323 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 Pfam Region in Clathrin and VPS 780 919 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 Pfam Region in Clathrin and VPS 632 771 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 Pfam Region in Clathrin and VPS 41 180 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 Pfam Region in Clathrin and VPS 485 621 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 Gene3D - 882 978 - -
Sto5g1495 1046 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 628 774 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 PANTHER CLATHRIN HEAVY CHAIN 1-RELATED 3 1044 - -
Sto5g1495 1046 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 187 326 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 SUPERFAMILY ARM repeat 241 406 IPR016024 -
Sto5g1495 1046 SUPERFAMILY ARM repeat 536 871 IPR016024 -
Sto5g1495 1046 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 777 920 IPR000547 GO:0006886|GO:0016192
Sto5g1495 1046 PIRSF CHC 2 1019 IPR016341 GO:0016192|GO:0032051|GO:0071439
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1495 Sto-Chr5 10305823 10310946 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1495 K04646 - gmx:100802224 1902.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1495 5 10305823 10310946 Sto5g1495 5 10305823 10310946 CCT
Sto9g2552 9 28146826 28160421 Sto5g1495 5 10305823 10310946 ECH
Sto5g1495 5 10305823 10310946 Sto5g1495 5 10305823 10310946 ECH