Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2539 ATGTCCAAACAGACTTACCGAGTCTGCTGCTGTAGCCGGCGGTTCAAGCTCGGCCAGTCGGAAGCGCCGCCGGAGATCAAGGCCCTTTTCGAACACTACTCTGAGAATAATGTTATGAACGCTGCTCACCTCCAGAGGTTCTTCAAAGAGGTGCAGAAACAAGAGAAAGCCACCGAAGAGGAAGCGCAAGCCATCATAGACGGCTTCCAGCATTTGAATATCTTTCATCGAAAGGGTTTCAATCTTGAGAGTTTCTTCAAGTACCTTTTCAGTGACAGTAACCCGCCTCTGTCGCCTTCTCTTGGGGTGCACCATGATATGACTGCACCCTTGTCTCATTATTACGTATTTACCGGTCATAACTCTTATCTAACTGGGAATCAGCTTAGCAGTGACTGCAGTGACGCCCCCATCATAACTGCCTTGCAGAGAGGTGTAAGAGTGATTGAATTGGACATATGGCCCAATTCCACAAAGGATGGCGTGGATGTTCTTCATGGAAGGACGCTGACTACTCCTGTAGAGCTCATCAAGTGTTTGAGGTCCATCAAGCAATATGCTTTTGTTGCGTCTGAATATCCAGTTGTAATAACTCTTGAAGACCATCTTACTCCAGATCTTCAGGCTAAAGTGGCTGAGaTGGTCACTCAAACATTTGGAGACATACTATTTTGTCCGGGTTCAGAAGCCTTGAAGGAATTTCCTTCTCCTGAATCGCTTAAAAAGAGGATTATTATATCAACCAAACCGCCTAAGGAGTACCTTCAGGCAAAAGAAGTAAAGGAGAAAGAGGATGATTTGCAGAAGGAAAAGGCTTCAGGAGATGAAGAAGCATGGGGGAAGGAGGTCCCAAGCCTCAAAGGTGGCACTATAGCTGATTACAAGGACAAtgaggatgaagaagatgatgatgaggaaGAACTTGATGAAGACAAGTCAAATCAAAATTCTGCATCTGAATATAGACGTTTAATTGCCATTCATGCTGGTAAACCTAAAGGTGGGTTAGAAGAATGTCTCAAAGTGGACCCAGATAGAGTGAGACGTCTAAGCTTAAGTGAGCAACAGCTTGAAAAGGCTGCCGAAACTCATGGAAAAGATATTGTCAGGTTTACTCAGCGGAATTTGCTGAGGGTGTATCCAAAAGGTACTCGAATTACCTCGTCAAACTACAACCCACTAATTGGGTGGATGCATGGGGCTCAAATGGTTGCATTCAACATGCAGGTGTGTGCTTTATTTGATTTCCTGGAATCACTCAAGGTGACTACATATATGGGGGAAGGATGGTATAATGATTTCAAACACACACACTTCGATCAATTCTCACCACCAGACTTCTATGCAAGAGTTGGGATTGCTGGAGTTGTTGCTGATACTATAATGAAAAAAACCAAGACATTAGAGGATAATTGGTTGCCTAGTTGGAATGAGGTATTTGAGTTCCCACTTACCGTTCCAGAACTGGCTCTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGTGGCCAAACATGCCTGCCTGTATCAGAGCTAAGTTATGGAATTCGAGCAGTTCCACTGTATAGCCGCAAGGGAGAGAAGTACAACCATGTAAAGCTTCTTATGCGCTTTGAATTTTACTGA 1644 0.4343 MSKQTYRVCCCSRRFKLGQSEAPPEIKALFEHYSENNVMNAAHLQRFFKEVQKQEKATEEEAQAIIDGFQHLNIFHRKGFNLESFFKYLFSDSNPPLSPSLGVHHDMTAPLSHYYVFTGHNSYLTGNQLSSDCSDAPIITALQRGVRVIELDIWPNSTKDGVDVLHGRTLTTPVELIKCLRSIKQYAFVASEYPVVITLEDHLTPDLQAKVAEMVTQTFGDILFCPGSEALKEFPSPESLKKRIIISTKPPKEYLQAKEVKEKEDDLQKEKASGDEEAWGKEVPSLKGGTIADYKDNEDEEDDDEEELDEDKSNQNSASEYRRLIAIHAGKPKGGLEECLKVDPDRVRRLSLSEQQLEKAAETHGKDIVRFTQRNLLRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQVCALFDFLESLKVTTYMGEGWYNDFKHTHFDQFSPPDFYARVGIAGVVADTIMKKTKTLEDNWLPSWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELSYGIRAVPLYSRKGEKYNHVKLLMRFEFY 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2539 547 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 350 411 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Sto9g2539 547 SMART C2_3c 419 527 IPR000008 -
Sto9g2539 547 SMART plcx_3 105 249 IPR000909 -
Sto9g2539 547 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Sto9g2539 547 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Sto9g2539 547 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Sto9g2539 547 PRINTS Phospholipase C signature 376 397 IPR001192 GO:0035556
Sto9g2539 547 PRINTS Phospholipase C signature 397 415 IPR001192 GO:0035556
Sto9g2539 547 ProSiteProfiles C2 domain profile. 400 529 IPR000008 -
Sto9g2539 547 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 351 409 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Sto9g2539 547 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 410 - -
Sto9g2539 547 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 419 546 - -
Sto9g2539 547 Gene3D C2 domain 419 547 IPR035892 -
Sto9g2539 547 CDD C2_PLC_like 419 547 - -
Sto9g2539 547 Coils Coil 291 314 - -
Sto9g2539 547 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 419 546 IPR001192 GO:0035556
Sto9g2539 547 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 410 IPR001192 GO:0035556
Sto9g2539 547 Pfam C2 domain 422 519 IPR000008 -
Sto9g2539 547 MobiDBLite consensus disorder prediction 295 311 - -
Sto9g2539 547 Coils Coil 257 277 - -
Sto9g2539 547 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Sto9g2539 547 SUPERFAMILY PLC-like phosphodiesterases 105 414 IPR017946 GO:0006629|GO:0008081
Sto9g2539 547 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 420 546 IPR035892 -
Sto9g2539 547 Pfam Phosphoinositide-specific phospholipase C, efhand-like 25 92 IPR015359 -
Sto9g2539 547 SMART plcy_3 321 421 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Sto9g2539 547 MobiDBLite consensus disorder prediction 256 317 - -
Sto9g2539 547 Gene3D - 21 100 - -
Sto9g2539 547 Gene3D Phosphatidylinositol (PI) phosphodiesterase 101 418 IPR017946 GO:0006629|GO:0008081
Sto9g2539 547 MobiDBLite consensus disorder prediction 256 282 - -
Sto9g2539 547 SUPERFAMILY EF-hand 23 99 IPR011992 -
Sto9g2539 547 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2539 Sto-Chr9 27996746 28001688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2539 1 546 Acyl Lipid Metabolism Gene Families AT3G55940 63.390 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2539 K05857 - gmx:100784534 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2539 9 27996746 28001688 Sto5g1510 5 10468534 10472344 ECH
Sto9g2539 9 27996746 28001688 Sto9g2539 9 27996746 28001688 ECH