Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0399 ATGAACAGATGCTTAAGAAATAGATCTTATCTCATCTTAATTAGTGCTAGTATTCGGCTAGgCTTATTACCAAATGGGAACTTCGAGCTAGGCCCAAAGCCATCACAACTGAAAGGCTCAGAAGTAAGAGGGCGAACCGCAATTCCGAGCTGGACCATCTCGGGGTTCGTCGAGTACATCAAATCGGGCCAGAAGCAAGGCGACATGTTGCTCGTGGTCCCTGAGGGTGCGTACGCCGTCAGGCTCGGCAACGAAGCCTCCATTAGGCAGAAAGTGAAGCTCACGAAAGGCGGGTTCTATTCCTTGACCTTGAGCGCCGCTCGCACCTGCGCTCAGGAGGAGAAGCTCAATGTCTCGGTGGCCCCCACCACCGAGAAAACCGATTGGGGCGTGTTTCCTATACAGACCATGTACGGGAGCAACGGGTGGGAGTCTTTTGCTTGTGGCTTCCGGGCCGATTTTGAGGAGCTCGATATTGTGATACATAACCCGGTTAATCTCCTAAAGAACGGAAACTTCGAGGAAGGCCCCTACGTATTACCCAACACATCCTGGGGCGTCCTAATTCCGCCCCACATCGAAGACGCCCACAGCCCCCTCCCGGGCTGGATCGTCGAGTCCCTCAAGGCCGTGAAATACATCGACTCGAGCCACTTCTCGGTCCCCCAGGGGACGCGAGCCATCGAGCTGGTGGCCGGGAAAGAGAGCGCCATAGCCCAGGTGGTCCCGACCACGATCGGCAAGGACTACGAGCTCACCTTCGCCGTGGGCGACGCCAACGGTCAGTGCGCGGGCTCGATGCAGGTCGAGGCGTTCGCCGCTAAGAGCACCGTGAGGGTGCCCTACGAGTCCAAGGGGAGAGGAGGGTTCGTGCGCGGGAGGCTCAGGTTCAAGGCCGTGGGGAGACGGACACGTGTCGTGTTCTTGAGCTCGTTTTATACGATGAAGAGTGATAACTCCGGGGCGTTGTGTGGGCCCGTGATTGATGATGTTAGGAAGAAGGTTGAGGATGTAATGCCCATTGCCACTGGCCATGAGCGCGAGGAGATTGAGGCGGAGCTTCAGGGGAAGAAGCTTCTCGATATAAACTTTCCCGAAGGTCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAGTCATACTATGACAAAAGGATAGTTGGATGCCCAGGAGGTGAAGGAGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAATGTCCAGTGTGCACACAATATTTTGAGCTTGAAGTGGTAGGACCTGGTGGTCCACCTGATGGACATGGCGATGACGACCATCATCATTGA 1326 0.5498 MNRCLRNRSYLILISASIRLGLLPNGNFELGPKPSQLKGSEVRGRTAIPSWTISGFVEYIKSGQKQGDMLLVVPEGAYAVRLGNEASIRQKVKLTKGGFYSLTLSAARTCAQEEKLNVSVAPTTEKTDWGVFPIQTMYGSNGWESFACGFRADFEELDIVIHNPVNLLKNGNFEEGPYVLPNTSWGVLIPPHIEDAHSPLPGWIVESLKAVKYIDSSHFSVPQGTRAIELVAGKESAIAQVVPTTIGKDYELTFAVGDANGQCAGSMQVEAFAAKSTVRVPYESKGRGGFVRGRLRFKAVGRRTRVVFLSSFYTMKSDNSGALCGPVIDDVRKKVEDVMPIATGHEREEIEAELQGKKLLDINFPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQYFELEVVGPGGPPDGHGDDDHHH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0399 441 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 322 429 IPR002124 GO:0005740|GO:0005751|GO:0006123
Sto9g0399 441 PANTHER OS02G0527500 PROTEIN 14 164 - -
Sto9g0399 441 PANTHER OS02G0527500 PROTEIN 166 332 - -
Sto9g0399 441 Gene3D - 159 332 - -
Sto9g0399 441 CDD Cyt_c_Oxidase_Vb 333 425 IPR002124 GO:0005740|GO:0005751|GO:0006123
Sto9g0399 441 Pfam Protein of unknown function (DUF642) 166 332 IPR006946 -
Sto9g0399 441 Pfam Protein of unknown function (DUF642) 21 165 IPR006946 -
Sto9g0399 441 Gene3D Cytochrome c oxidase, subunit Vb 333 425 IPR036972 GO:0005740|GO:0005751|GO:0006123
Sto9g0399 441 PANTHER OS02G0527500 PROTEIN-RELATED 14 164 - -
Sto9g0399 441 PANTHER OS02G0527500 PROTEIN-RELATED 166 332 - -
Sto9g0399 441 Pfam Cytochrome c oxidase subunit Vb 342 428 IPR002124 GO:0005740|GO:0005751|GO:0006123
Sto9g0399 441 SUPERFAMILY Rubredoxin-like 333 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0399 Sto-Chr9 3895326 3903904 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0399 - - gmx:100802656 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0399 9 3895326 3903904 Sto1g0193 1 1364616 1367692 CCT
Sto9g0399 9 3895326 3903904 Sto9g0399 9 3895326 3903904 ECH